Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74680 524 / 0 Exostosin family protein (.1) AT3G45400 486 / 2e-169 exostosin family protein (.1) AT3G03650 459 / 9e-159 EDA5 embryo sac development arrest 5, Exostosin family protein (.1) AT1G67410 321 / 1e-105 Exostosin family protein (.1) AT2G35100 246 / 3e-76 ARAD1 ARABINAN DEFICIENT 1, Exostosin family protein (.1) AT5G44930 238 / 3e-73 ARAD2 ARABINAN DEFICIENT 2, Exostosin family protein (.1.2) AT5G16890 216 / 5e-64 Exostosin family protein (.1) AT1G34270 213 / 3e-63 Exostosin family protein (.1) AT1G27440 81 / 3e-16 ATGUT1, IRX10, GUT2 Exostosin family protein (.1) AT5G25820 81 / 5e-16 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024214 [exp] 788 / 0 AT1G74680 468 / 3e-163 Exostosin family protein (.1) Lus10003870 [exp] 510 / 1e-178 AT3G45400 644 / 0.0 exostosin family protein (.1) Lus10020308 [exp] 503 / 8e-176 AT3G45400 622 / 0.0 exostosin family protein (.1) Lus10005684 [exp] 506 / 2e-175 AT3G45400 619 / 0.0 exostosin family protein (.1) Lus10013627 [exp] 412 / 2e-142 AT3G45400 524 / 0.0 exostosin family protein (.1) Lus10015791 [exp] 324 / 2e-106 AT1G67410 595 / 0.0 Exostosin family protein (.1) Lus10037016 [exp] 322 / 1e-105 AT1G67410 590 / 0.0 Exostosin family protein (.1) Lus10036219 [exp] 257 / 4e-79 AT2G35100 611 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10038355 [exp] 251 / 2e-78 AT2G35100 605 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G210000 [exp] 599 / 0 AT1G74680 565 / 0.0 Exostosin family protein (.1) Potri.013G067400 [exp] 519 / 0 AT3G45400 587 / 0.0 exostosin family protein (.1) Potri.019G044600 [exp] 510 / 2e-178 AT3G45400 607 / 0.0 exostosin family protein (.1) Potri.008G034500 [exp] 315 / 5e-103 AT1G67410 557 / 0.0 Exostosin family protein (.1) Potri.012G124600 [exp] 253 / 2e-78 AT2G35100 604 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.015G124800 [exp] 245 / 1e-75 AT2G35100 581 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.013G116200 [exp] 229 / 2e-69 AT1G34270 660 / 0.0 Exostosin family protein (.1) Potri.019G049800 [exp] 227 / 2e-68 AT5G16890 693 / 0.0 Exostosin family protein (.1) Potri.019G086800 [exp] 220 / 6e-66 AT1G34270 655 / 0.0 Exostosin family protein (.1) Potri.005G055000 [exp] 115 / 3e-31 AT3G45400 145 / 5e-43 exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10002060 pacid=23162014 polypeptide=Lus10002060 locus=Lus10002060.g ID=Lus10002060.BGIv1.0 annot-version=v1.0 ATGTCTGAGAAAACCAGGACTCCATCAAGGCTTCTGTTCTACCTAATCACTCTTTCATTGTTCCTCTTGATACTTTCTTCTCTGTCCCTTCGTCAGTTTG GCAATGTCTCGTTGCTACCCGGATCCGTTTTTGGGATGATCCTTGTCAATGAAACCTCAATTTCTTCGAATTCGGACTTTCAAACTAGCTCAAACAATAT AACCCCCTTCTTTTCACCTCTTGCCTCAATAACACAGTCCTCTAATGAAGGAAGAGCTTGTTCAACTTCTGGAAGCTTGAGTTGTGACCCTAACAATGCT GTTCTAAAGGTATATATGTATGACCTGCCTCCTGAATTTCACTTTGGATTACTTGGTTGGAAAGGAACTGCAAATCAAAGATGGCCTGATGTGGATGATC CTATGCATATCCCTTCCTATCCCGGTGGATTGACTTTGCAGCATAGTATGGAGTATTGGCTGACACTTGATCTGCTAGCATCTAACGTGCCAAGTATTGT CAGATCTTGCAGTGCAGTTAGAGTTGATAATTCTAGTGAAGCAGATGTAGTCTTTGTGCCGTTTTTCTCCTCTCTGAGTTACAATCGGCATTCCAAGCCT TTGGGGAGACAGAAAGTTGGACTCAACAAAATTTTGCAAGACAAATTGGTGAAGTATCTGGTGGATCAGGATTTGTGGAAGAGATATGGTGGGAAGAATC ATTTGATTGTGGCACATCATCCTAATAGCATGGCGTATTCCAGGAAAAAGTTGGCTTCTGCCATGTTTGTGCTTGCAGATTTCGGGAGGTATCCTGAAAA GGTGGCGAATATAAAAAAGGATGTGATAGCTCCTTATAAACATGTCGTCCGTAGCGTTCCAAATGCTAAATCAGCTCGGTTTGATCAGCGTCCTACACTA GCTTATTTCAAAGGAGCTATTTACAGAAAGGATGGAGGAGCTACCCGCCAGGAGCTGTATTACCTGCTGAAAGATGAAAAAGATGTAGACTTTACATTTG GATCCTACGGAAAAGATGGAGTCAAGAAGGCCACTGAAGGAATGGCTGGATCAAAGTTCTGCTTACATATAGCTGGTGATACACCTTCCTCGAATCGTCT ATTCGACATCATCGCCACTCATTGTGTCCCTGTCATAATAAGCGATGCAATTGAGCTACCCTTTGAAGACGAGCTGGACTACTCTGAGTTCAGTGTGTTT GTTCATGCATCTGATGCTGTCAAACCAGGGTACCTGCTAAATCTTCTACGTGGAATCAAGCGAGACGTGTGGACCGAGATGTGGCTGAAATTACAAGAAA TAAGTTTTCACTTTGAGTATCGTTATCCTTCCCTGCCTGGTGATGCTGTCGATATGATCTGGAATGCAGTATCGCGGAAGCTGGATTCGGTTCGGTTACA GGTTAACCGGAAGAACAGATACCACCGTGCTTACCAGAACCAGATTGAACAAGACAATTAG
AA sequence Show only first row Show all	>Lus10002060 pacid=23162014 polypeptide=Lus10002060 locus=Lus10002060.g ID=Lus10002060.BGIv1.0 annot-version=v1.0 MSEKTRTPSRLLFYLITLSLFLLILSSLSLRQFGNVSLLPGSVFGMILVNETSISSNSDFQTSSNNITPFFSPLASITQSSNEGRACSTSGSLSCDPNNA VLKVYMYDLPPEFHFGLLGWKGTANQRWPDVDDPMHIPSYPGGLTLQHSMEYWLTLDLLASNVPSIVRSCSAVRVDNSSEADVVFVPFFSSLSYNRHSKP LGRQKVGLNKILQDKLVKYLVDQDLWKRYGGKNHLIVAHHPNSMAYSRKKLASAMFVLADFGRYPEKVANIKKDVIAPYKHVVRSVPNAKSARFDQRPTL AYFKGAIYRKDGGATRQELYYLLKDEKDVDFTFGSYGKDGVKKATEGMAGSKFCLHIAGDTPSSNRLFDIIATHCVPVIISDAIELPFEDELDYSEFSVF VHASDAVKPGYLLNLLRGIKRDVWTEMWLKLQEISFHFEYRYPSLPGDAVDMIWNAVSRKLDSVRLQVNRKNRYHRAYQNQIEQDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74680			Exostosin family protein (.1)		Lus10002060 [exp]	0	1
AT5G49020		ATPRMT4A	ARABIDOPSIS THALIANA PROTEIN A...		Lus10043412 [exp]	4.0	0.9374
AT5G12970			Calcium-dependent lipid-bindin...		Lus10031244 [exp]	4.5	0.9228
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Lus10021862 [exp]	5.9	0.9078
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Lus10041472 [exp]	8.6	0.9074
AT4G32330			TPX2 (targeting protein for Xk...		Lus10002012 [exp]	10.1	0.9213
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Lus10020887 [exp]	10.2	0.9249
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10034682 [exp]	12.2	0.9270
AT4G16180			unknown protein		Lus10037780 [exp]	13.5	0.9204
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10013183 [exp]	15.1	0.9275
AT4G34200		EDA9	embryo sac development arrest ...		Lus10019818 [exp]	24.2	0.9156

Compare expression of checked genes

Lus10002060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.