Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54900 267 / 2e-86 ATRBP45A RNA-binding protein 45A (.1) AT1G11650 214 / 7e-67 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G19350 217 / 1e-66 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G27000 191 / 1e-56 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G19130 189 / 6e-56 ATRBP47B RNA-binding protein 47B (.1) AT1G49600 186 / 2e-54 ATRBP47A RNA-binding protein 47A (.1) AT1G47490 164 / 2e-47 ATRBP47C RNA-binding protein 47C (.1.2) AT1G47500 166 / 3e-47 ATRBP47C' RNA-binding protein 47C' (.1) AT1G17370 77 / 4e-15 UBP1B oligouridylate binding protein 1B (.1.2) AT3G14100 77 / 4e-15 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018345 [exp] 491 / 2e-174 AT1G11650 439 / 1e-153 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012070 [exp] 252 / 1e-80 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1) Lus10012071 [exp] 233 / 6e-74 AT1G49600 442 / 2e-155 RNA-binding protein 47A (.1) Lus10043106 [exp] 230 / 2e-71 AT4G27000 341 / 4e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10027911 [exp] 209 / 8e-65 AT1G49600 411 / 3e-143 RNA-binding protein 47A (.1) Lus10031277 [exp] 205 / 3e-62 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10031844 [exp] 204 / 6e-62 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10021754 [exp] 183 / 3e-53 AT1G47490 509 / 1e-179 RNA-binding protein 47C (.1.2) Lus10019889 [exp] 166 / 6e-48 AT3G19130 450 / 1e-158 RNA-binding protein 47B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G017200 [exp] 348 / 7e-118 AT1G11650 423 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G423400 [exp] 329 / 5e-110 AT4G27000 474 / 2e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.011G138400 [exp] 283 / 1e-92 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G054400 [exp] 264 / 7e-85 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G105300 [exp] 194 / 1e-57 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1) Potri.004G143400 [exp] 192 / 6e-57 AT3G19130 480 / 2e-168 RNA-binding protein 47B (.1) Potri.014G034600 [exp] 189 / 8e-56 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.002G128100 [exp] 183 / 1e-53 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.003G069000 [exp] 77 / 2e-15 AT1G17370 621 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.001G166100 [exp] 77 / 2e-15 AT1G17370 622 / 0.0 oligouridylate binding protein 1B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10002063 pacid=23153379 polypeptide=Lus10002063 locus=Lus10002063.g ID=Lus10002063.BGIv1.0 annot-version=v1.0 ATGATGCAGCAGCCAGGTTCCGGCGGAATCACTAATCAGCCACCGATGGCCGGACAGCAATTACCTCCCAACATGGCTGTCCCGCCGCAGGCTCACCCAC AGCAGTATCAGCAGTCTCCTTATATGATGATGATGCCTCAGGCTCCTCAGTCTCAGCATCCTCCTGCCGCTATGTGGAACAACCAGCAGCCTCAGGCGAT GCCTCCACAGCAGCAGCAGCAGCAAGCTCAGCAAGGACTTTCCGGCGGCAGTGGTGACGAGATTCGAACGTTGTGGATCGGCGACTTGCAGTACTGGATG GACGAGAACTATTTGGCTAGCTGCTTTTCTCAGACTGGCGAGGTTGCTTCTGTGAAAGTGATTCGCAATAAGCAGAGCGGACAGATGGAAGGGTACGGGT TTATGGAGTTTACCAGCCACGCTGCCGCAGAGAGGATACTGCAGACATACAATGGCAACCCTATGCCTAATGGCGAGCAGAACTTCAGGTTGAACTGGGC TTCTTATGGAGCTGGTGAGAAGCGTGATGATGGTCCTGAGTTCACCATATTTGTGGGGGACTTAGCTGCAGATGTTACGGACTACATTCTCCAGGAGACG TTCAGAGTCCACTATCCATCTGTGAAAGGAGCTAAAGTACTCTCTTCGTATCAGAATTCCCCAACTCCAATGGATAACGAGAATGATCCAAATAATACAA CTATATTTGTTGGTAATTTGGATTCAAATGTTACTGATAACCATTTGAGAGAACTTTTTAGCCAATATGGCCAATTGGTACATGTGAAGATACCAGCCGG CAAAAGATGTGGCTTCATTCAGTATGCCAACAGGAGCTGTGCTGAGGAAGCATTGAATAGGTTGAATGGAGCCGAGGTTAGCGGACAAAGTATTCGGCTA TCGTGGGGACGCAATTCTTCAAACAAACAGTCACAGTCTGAAGGTGGAAACCAGTGGAATGGTGAAGCTGCCGGTGGTGCCGGGTACTATGGGTATCCAC AAGGTTACGAGAACTACGGGTATGTGCAAGCTCCACCTGCGCAGGACCCAAACATGTACTATGGAGGCTATCCTGCTGGCTACGCCAATTATCAACAACA GCCACCCCAGCAACAGCAACAGCAACTGGGTTATAGAACCTGA
AA sequence Show only first row Show all	>Lus10002063 pacid=23153379 polypeptide=Lus10002063 locus=Lus10002063.g ID=Lus10002063.BGIv1.0 annot-version=v1.0 MMQQPGSGGITNQPPMAGQQLPPNMAVPPQAHPQQYQQSPYMMMMPQAPQSQHPPAAMWNNQQPQAMPPQQQQQQAQQGLSGGSGDEIRTLWIGDLQYWM DENYLASCFSQTGEVASVKVIRNKQSGQMEGYGFMEFTSHAAAERILQTYNGNPMPNGEQNFRLNWASYGAGEKRDDGPEFTIFVGDLAADVTDYILQET FRVHYPSVKGAKVLSSYQNSPTPMDNENDPNNTTIFVGNLDSNVTDNHLRELFSQYGQLVHVKIPAGKRCGFIQYANRSCAEEALNRLNGAEVSGQSIRL SWGRNSSNKQSQSEGGNQWNGEAAGGAGYYGYPQGYENYGYVQAPPAQDPNMYYGGYPAGYANYQQQPPQQQQQQLGYRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Lus10002063 [exp]	0	1
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10028113 [exp]	12.2	0.8816
AT1G79150			binding (.1)		Lus10029032 [exp]	19.4	0.8794
AT1G76740			unknown protein		Lus10028114 [exp]	22.5	0.8759
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Lus10039885 [exp]	25.2	0.8379
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10016352 [exp]	25.3	0.8791
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Lus10019430 [exp]	27.3	0.8237
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Lus10040956 [exp]	27.5	0.8636
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Lus10014278 [exp]	28.4	0.8727
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10025168 [exp]	29.3	0.8755
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Lus10002169 [exp]	33.5	0.8679

Compare expression of checked genes

Lus10002063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.