Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52890 99 / 1e-22 AT hook motif-containing protein (.1.2) AT4G21895 86 / 6e-19 DNA binding (.1) AT5G54930 71 / 3e-13 AT hook motif-containing protein (.1.2) AT3G13350 42 / 0.0005 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001140 [exp] 729 / 0 AT5G52890 113 / 2e-27 AT hook motif-containing protein (.1.2) Lus10040754 [exp] 81 / 1e-16 AT5G54930 132 / 1e-36 AT hook motif-containing protein (.1.2) Lus10016478 [exp] 81 / 1e-16 AT5G54930 125 / 5e-34 AT hook motif-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G001901 [exp] 154 / 1e-41 AT4G21895 74 / 5e-15 DNA binding (.1) Potri.004G017000 [exp] 152 / 1e-40 AT4G21895 96 / 2e-22 DNA binding (.1) Potri.011G138700 [exp] 83 / 6e-17 AT5G54930 93 / 5e-21 AT hook motif-containing protein (.1.2) Potri.001G422966 [exp] 82 / 7e-17 AT5G54930 102 / 4e-25 AT hook motif-containing protein (.1.2) Potri.011G168800 [exp] 43 / 0.0002 AT3G13350 307 / 3e-104 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002064 pacid=23153382 polypeptide=Lus10002064 locus=Lus10002064.g ID=Lus10002064.BGIv1.0 annot-version=v1.0 ATGAACTCACAGAATCAAGGGTCTGGATCTTCTACGCCTCTAGATCCCCCTCAGAGGCGCAAGCGAGGTCGTCCACGAAAGGACGAGCACCTGCTCCCAG GAGAAAACATGTTCTCTGTTCCTGTGCCCGACAATATGCTGATAAACACTCAGACTTTCGGTTTAGCTGTTGCTGGCAGCAGTAGTGAGCCGTCCGGTCC GGTGGTTGGGAGTAACATGATCGGCCAGGCGGTTTCTGGGGTTGTTGATGGAAAGTTCGATGCCGGATATCTTCTAAAAGTTAAAGTAGGAGATAGCGAA AATTATTTGAGAGGGGTCGTGTTCTTGCCAAATCGCGTAGTTCCAGTTACTGCTGCTAATGATCTGGCTCCACAAGCGAAAATGTATACCAGAGCAGATG TCCCCATCCCGGTCCTCAACCTGCCACAGTTTCAGGTTTCTGTTCCTCCACCAGAGCAAAGTGAAAAGCAATCTGCTGAACCTAAAGTTTTTAAACCTGT TGAAGGCCAAGAAATGTCATCTGATCATCAACCAAGCCCTGGAACCGGTAAAGAGAATCAATTCGCTTCGGTTACGCTACCTCTCACTGATAATTTCCGA GCAGTGAATGTCATGTCACAGCAAATCTTGGATTCAGGATCTGGTAGCCGTTCTCCAGCCAACTTAGCACCAACGGGGAGTGCCACAGCTGCTAGGCAGG ATGATTTACTATTAGAGTTTGATGCCTCCATGAAAAAAGTCGAGGCAGCTTCAAAACTGTCAAGTTCAACTGTCAATCTTGAGCTTCAAATTCAACACCA GCCTAACGAATTTGATGCCAGCCAGTCGGTTCTGGAAGGAGGGAAGACTACAACCCCGGAGCTCGTCCAACCTCATGGGATCGGAGAACCTGGAAGTGGA ATCATCTCCTCGGAATCAGCAGATGGTATGAGTATTTCCTTGGGTAACCCAACTCCTCCGTCGAAAGCTGCACCACTGAACCCTGCTACAGATGTTACCG TCACAGATACTCCATCTGAAGACCTAAATAGTGGCCTTGTAGGTCATGCTGCAGAAATTCCCCAGGCGGACACAAATTGTCCATCAACTACTGCTGTGGT GATGGAGAAAGAAGCTATTTACTCTGTGCCAAAGTCCGGTCATGCTGCAGAAATTCCCCAGGCGGACACAAATTGTCCATCAACAGCTGCTGTGGTGATG GAGAAAGAAGCTATTTACTCTGTGCCAAAGTCCGATTCTGAGGGATCATCATCTCTTCAGAAAATACTGGAATCCCAGTTCGGCTGTTCTTCTGGTGGCA TGGACCCGATGAAAATGGACCCTCCAATGGCAAACAGCTCACCAATGGAGTTGTTCGAGAATCCGCCCGAACCAAAGTTTGTAAATGATGGAGGTTTCGT GGCTTGTGTGAGTATTGAACCCCCCCAGCTGTGCAAAGATGACATGCCCCCTGCAGAGTCTTGA
AA sequence Show only first row Show all	>Lus10002064 pacid=23153382 polypeptide=Lus10002064 locus=Lus10002064.g ID=Lus10002064.BGIv1.0 annot-version=v1.0 MNSQNQGSGSSTPLDPPQRRKRGRPRKDEHLLPGENMFSVPVPDNMLINTQTFGLAVAGSSSEPSGPVVGSNMIGQAVSGVVDGKFDAGYLLKVKVGDSE NYLRGVVFLPNRVVPVTAANDLAPQAKMYTRADVPIPVLNLPQFQVSVPPPEQSEKQSAEPKVFKPVEGQEMSSDHQPSPGTGKENQFASVTLPLTDNFR AVNVMSQQILDSGSGSRSPANLAPTGSATAARQDDLLLEFDASMKKVEAASKLSSSTVNLELQIQHQPNEFDASQSVLEGGKTTTPELVQPHGIGEPGSG IISSESADGMSISLGNPTPPSKAAPLNPATDVTVTDTPSEDLNSGLVGHAAEIPQADTNCPSTTAVVMEKEAIYSVPKSGHAAEIPQADTNCPSTAAVVM EKEAIYSVPKSDSEGSSSLQKILESQFGCSSGGMDPMKMDPPMANSSPMELFENPPEPKFVNDGGFVACVSIEPPQLCKDDMPPAES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52890			AT hook motif-containing prote...		Lus10002064 [exp]	0	1
AT2G33840			Tyrosyl-tRNA synthetase, class...		Lus10029613 [exp]	15.3	0.7165
AT3G63250		HMT-2, ATHMT-2 ...	HOMOCYSTEINE METHYLTRANSFERASE...		Lus10014686 [exp]	19.6	0.7298
AT1G10840		TIF3H1	translation initiation factor ...		Lus10007054 [exp]	65.8	0.6969
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10024597 [exp]	106.6	0.6562
AT1G21740			Protein of unknown function (D...		Lus10029683 [exp]	121.0	0.6677
AT5G59160		PPO, TOPP2	PROTOPORPHYRINOGEN OXIDASE, ty...		Lus10004989 [exp]	145.5	0.6760
AT3G15180			ARM repeat superfamily protein...		Lus10027294 [exp]	162.4	0.6519
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Lus10010206 [exp]	177.1	0.6625

Compare expression of checked genes

Lus10002064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.