Plant FIBer expression Database

Lus10002065 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G04745 49 / 3e-08 unknown protein
AT1G11655 49 / 3e-08 unknown protein
AT4G21902 43 / 5e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001141
[exp]
188 / 4e-63 AT1G11655 69 / 4e-16 unknown protein
Lus10020050
[exp]
79 / 4e-20 AT1G11655 68 / 5e-16 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G002100
[exp]
71 / 4e-17 AT4G04745 58 / 1e-11 unknown protein
Potri.004G016800
[exp]
71 / 9e-17 AT4G04745 56 / 6e-11 unknown protein
PFAM info
Representative CDS sequence
>Lus10002065 pacid=23153385 polypeptide=Lus10002065 locus=Lus10002065.g ID=Lus10002065.BGIv1.0 annot-version=v1.0
ATGAGCATTGGCCAGAGAATGAATATATCTAACAGCGGTTACTCGAAGCTGGACAAAGAAGACCCAGAAGATGTCAACCACAGAAGGGCTCAGTTTCTCA
TCTACAAAGTAATGCAGCAAGTGGACAAGCAGTACTCACAGAGGAGGAAGATTCATCCTCTCCTCTCTACGACGTCGTTTATCGGGATCAGGCTGTGCCG
CCTCAAGATCAAAATTCGGAAGAAGCTCAGGAAAGGTGTGCTGGCGAGTGCCAGATTAAGGATCTATAGGCAACTCAAGATTCAGTGGAAGCGCTTGTTT
GGACGGCCGGCCGGTGAGACCATCGCCGGCGCCGCCGTTGGTCTTCCTGCTTCGATTTTCCCTTCGCTGTAA
AA sequence
>Lus10002065 pacid=23153385 polypeptide=Lus10002065 locus=Lus10002065.g ID=Lus10002065.BGIv1.0 annot-version=v1.0
MSIGQRMNISNSGYSKLDKEDPEDVNHRRAQFLIYKVMQQVDKQYSQRRKIHPLLSTTSFIGIRLCRLKIKIRKKLRKGVLASARLRIYRQLKIQWKRLF
GRPAGETIAGAAVGLPASIFPSL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G11655 unknown protein Lus10002065
[exp]
0 1
AT4G15550 IAGLU indole-3-acetate beta-D-glucos... Lus10019989
[exp]
1.4 0.9565
AT2G36890 MYB BIT1, ATMYB38, ... REGULATOR OF AXILLARY MERISTEM... Lus10026543
[exp]
3.0 0.9290
AT1G51340 MATE efflux family protein (.1... Lus10026303
[exp]
3.7 0.9360
AT4G37650 GRAS SGR7, SHR SHORT ROOT, SHOOT GRAVITROPISM... Lus10019361
[exp]
4.5 0.9263
AT5G06060 NAD(P)-binding Rossmann-fold s... Lus10010874
[exp]
7.9 0.8922
AT1G76690 OPR2, ATOPR2 ARABIDOPSIS 12-OXOPHYTODIENOAT... Lus10001274
[exp]
10.0 0.9083
AT1G22150 SULTR1;3 sulfate transporter 1;3 (.1) Lus10041111
[exp]
11.7 0.8904
AT5G50760 SAUR-like auxin-responsive pro... Lus10003140
[exp]
12.6 0.9228
AT1G76690 OPR2, ATOPR2 ARABIDOPSIS 12-OXOPHYTODIENOAT... Lus10009473
[exp]
14.2 0.9141
AT1G75130 CYP721A1 "cytochrome P450, family 721, ... Lus10016310
[exp]
14.3 0.9187

Lus10002065 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.