Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21690 634 / 0 MATE efflux family protein (.1) AT1G11670 588 / 0 MATE efflux family protein (.1) AT1G61890 582 / 0 MATE efflux family protein (.1) AT4G21910 528 / 0 MATE efflux family protein (.1.2.3.4) AT4G21903 509 / 1e-177 MATE efflux family protein (.1.2) AT1G47530 404 / 1e-136 MATE efflux family protein (.1) AT1G12950 388 / 8e-130 RSH2 root hair specific 2 (.1) AT3G26590 384 / 1e-128 MATE efflux family protein (.1) AT5G38030 384 / 1e-128 MATE efflux family protein (.1) AT3G59030 383 / 3e-128 ATTT12, TT12 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001142 [exp] 914 / 0 AT3G21690 712 / 0.0 MATE efflux family protein (.1) Lus10027169 [exp] 630 / 0 AT3G21690 740 / 0.0 MATE efflux family protein (.1) Lus10020049 [exp] 587 / 0 AT3G21690 640 / 0.0 MATE efflux family protein (.1) Lus10027168 [exp] 553 / 0 AT3G21690 643 / 0.0 MATE efflux family protein (.1) Lus10039673 [exp] 544 / 0 AT4G21910 650 / 0.0 MATE efflux family protein (.1.2.3.4) Lus10042130 [exp] 402 / 6e-136 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 400 / 1e-134 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10006206 [exp] 392 / 2e-131 AT3G26590 664 / 0.0 MATE efflux family protein (.1) Lus10006205 [exp] 390 / 5e-131 AT3G26590 686 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G002800 [exp] 712 / 0 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.004G016400 [exp] 704 / 0 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.011G002700 [exp] 704 / 0 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.011G002900 [exp] 702 / 0 AT3G21690 654 / 0.0 MATE efflux family protein (.1) Potri.011G002600 [exp] 660 / 0 AT3G21690 610 / 0.0 MATE efflux family protein (.1) Potri.014G153100 [exp] 635 / 0 AT3G21690 704 / 0.0 MATE efflux family protein (.1) Potri.011G002200 [exp] 625 / 0 AT1G11670 669 / 0.0 MATE efflux family protein (.1) Potri.011G002500 [exp] 612 / 0 AT3G21690 613 / 0.0 MATE efflux family protein (.1) Potri.011G002400 [exp] 583 / 0 AT3G21690 636 / 0.0 MATE efflux family protein (.1) Potri.002G055100 [exp] 409 / 3e-138 AT3G59030 719 / 0.0 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10002067 pacid=23153384 polypeptide=Lus10002067 locus=Lus10002067.g ID=Lus10002067.BGIv1.0 annot-version=v1.0 ATGCTGAGCTCTTCGCAACCTTTGCTACAGAGCTTCAGGGCTTCCAATCTGGAGGATGTAAGCTCGGAGCTTGAGGACATCCTCACTGATCCCCATACTC CTTACTGGAAGCGGCTCAGAGGTGCCACGAGAATTGAACTCGGTTTGCTTTTCACGCTCGCCGCCCCTGCCGTCATCGTCTACCTCCTTAACAATGTGGT CTCCATGTCCACCCAGATCTTCTGCGGCCACCTCGGTAATCTCGAGCTCGCCGCTGTCTCCCTCGGCAACACCGGCATCCAAGTCTTCGCCTACGGTCTC ATGCTTGGAATGGGAAGTGCGGTAGAAACTCTGTGTGGGCAAGCCTACGGTGCCAACAGATTCGAAACTCTGGGAATCTATCTTCAACGGTCCACAATCC TCCTAGTAGCGACAGGACTCCCACTAATGGTGGTCTACATCTTCTGCAAGCCCATCCTAATCTTGCTGGGAGAGCCGTCCAACATAGCCGCAGCAGCTTC CATCTTTGTCTACGGGCTGATCCCGCAGATATTCGCATATGCGGCCAACTTCCCCATCCAGAAGTTTCTCCAGTCTCAGAGCATCATAGCACCCAGCGCG TACATCTCCCTCGCGGCGCTGGCGGTCCACCTGGTGCTATCGTGGCTGGCCATATACAAGTGGGGGTGGGGCTTGCTGGGTGCTGGTTTGATACTAAGTT TGTCGTGGTGGCTGATTGTGGTGGCCCAGTTTGCGTACATAGTGTGCAGCAAGAGGTGTAAGAAGACGTGGCAAGGGTTCAACGTTCAGGCATTTTCTGG GCTGTGGGGTTTCTTCAAGCTTTCTGCTGCTTCCGCTGTTATGCTTTGCTTGGAGACTTGGTATTTCCAGATTCTTGTCCTCATTGCTGGCTTGCTCCCC GATCCCGAGATCGCTCTGGATTCTCTTTCAGTCTGTATGACAATATCCGGATGGGTTTACATGATATCCGTTGGTTTCAACGCTGCAGCCAGTGTACGAG TGAGCAACGAGCTAGGAGCAGGGCATCCGAAGTCAGCATCGTTCTCGGTGATGATCGTGACATGGTCATCGTTCATAATAGCGGTGATCGCGGCCATCAT AGTGATGTCATTGCGCGTCATAGTGATGTCATTGTGGGACGTGCTGTGTTATGTGTTTACGGAAGGGGAAGTTGTAGCTGCGGCGGTGTCTGATCTCAGC CCATTCCTCGCTATAACTCTCATCTTAAACGGAATCCAGCCAGTTCTCTCCGGAGTGGCAGTGGGATGTGGATGGCAAGCATTTGTGGCTTATGTGAACG TGGGCTGTTACTACATCATTGGAGTCCCCGCCGGTGTCCTTCTTGGTTTTACTTTTAACCTTGGAGCTAAGGGTATTTGGTCTGGAATGATTGGAGGCAC ATTCTTGCAAACATTGATACTCATTTGGACCACTTACAGGACCGACTGGAATACAGAGGTGGAGAAGGCCAAAGAACGGCTGACAACGTGGGACGATTAC AAGAAGGAAGTTATGGCCGCCGATAGCCAAGAAAGATTGCTGCTGTCTTAA
AA sequence Show only first row Show all	>Lus10002067 pacid=23153384 polypeptide=Lus10002067 locus=Lus10002067.g ID=Lus10002067.BGIv1.0 annot-version=v1.0 MLSSSQPLLQSFRASNLEDVSSELEDILTDPHTPYWKRLRGATRIELGLLFTLAAPAVIVYLLNNVVSMSTQIFCGHLGNLELAAVSLGNTGIQVFAYGL MLGMGSAVETLCGQAYGANRFETLGIYLQRSTILLVATGLPLMVVYIFCKPILILLGEPSNIAAAASIFVYGLIPQIFAYAANFPIQKFLQSQSIIAPSA YISLAALAVHLVLSWLAIYKWGWGLLGAGLILSLSWWLIVVAQFAYIVCSKRCKKTWQGFNVQAFSGLWGFFKLSAASAVMLCLETWYFQILVLIAGLLP DPEIALDSLSVCMTISGWVYMISVGFNAAASVRVSNELGAGHPKSASFSVMIVTWSSFIIAVIAAIIVMSLRVIVMSLWDVLCYVFTEGEVVAAAVSDLS PFLAITLILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYIIGVPAGVLLGFTFNLGAKGIWSGMIGGTFLQTLILIWTTYRTDWNTEVEKAKERLTTWDDY KKEVMAADSQERLLLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21690			MATE efflux family protein (.1...		Lus10002067 [exp]	0	1
AT2G46910			Plastid-lipid associated prote...		Lus10000058 [exp]	7.8	0.7816
AT1G14280		PKS2	phytochrome kinase substrate 2...		Lus10012831 [exp]	10.4	0.8645
AT3G45070			P-loop containing nucleoside t...		Lus10034079 [exp]	12.3	0.8483
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10039891 [exp]	13.9	0.8627
AT1G72100			late embryogenesis abundant do...		Lus10041310 [exp]	20.3	0.7302
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10000279 [exp]	20.8	0.8553
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10019637 [exp]	23.9	0.8552
AT1G14960			Polyketide cyclase/dehydrase a...		Lus10042489 [exp]	26.3	0.8546
					Lus10006417 [exp]	26.6	0.8530
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10030480 [exp]	28.0	0.8531

Compare expression of checked genes

Lus10002067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.