Plant FIBer expression Database

Lus10002068 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G21920 64 / 5e-14 unknown protein
AT3G20340 55 / 1e-10 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001143
[exp]
191 / 3e-64 AT4G21920 66 / 9e-15 unknown protein
Lus10006774
[exp]
80 / 3e-20 AT4G21920 62 / 5e-13 unknown protein
Lus10021518
[exp]
62 / 4e-13 AT3G20340 71 / 7e-17 unknown protein
Lus10021358
[exp]
44 / 5e-06 AT3G10120 122 / 2e-35 unknown protein
Lus10017035
[exp]
42 / 3e-05 AT3G10120 119 / 7e-34 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G015900
[exp]
100 / 2e-28 AT4G21920 55 / 1e-10 unknown protein
Potri.011G003100
[exp]
91 / 2e-24 AT3G20340 60 / 1e-12 unknown protein
Potri.011G139400
[exp]
48 / 5e-08 AT3G20340 47 / 5e-08 unknown protein
PFAM info
Representative CDS sequence
>Lus10002068 pacid=23153395 polypeptide=Lus10002068 locus=Lus10002068.g ID=Lus10002068.BGIv1.0 annot-version=v1.0
ATGGGAAACTGCTGCAGGGGAGCATCAAGGGGCTCGGTTTGGGCCGGTGATGATTGGGAATGCGTCGACCAACACTATAAAGTTATGTTCGATGCAGACG
ACGATGCTGACCATGACCATGAGAATGATTGTACCGCCGACGAAGGAAACAGGCTGCTTCCTGCTGACACACCCTCGTCTTCGTCGAGCAGGGAGGTGAA
GATAAAGATATCGAGAAGGGAGCTGGAAGAGTTGATGTCGAGAGCAGAACTTGGATTGTCCTCCGAACAAGTCCTAGTTAGGCTGATCTTATCAGCTGGT
AATAATCATGATCTACAAGCAGAACTTCATCATAGACACTGGAAGCCTGCCCTTCAAAGCATCCCTGAGCTTGACTGA
AA sequence
>Lus10002068 pacid=23153395 polypeptide=Lus10002068 locus=Lus10002068.g ID=Lus10002068.BGIv1.0 annot-version=v1.0
MGNCCRGASRGSVWAGDDWECVDQHYKVMFDADDDADHDHENDCTADEGNRLLPADTPSSSSSREVKIKISRRELEELMSRAELGLSSEQVLVRLILSAG
NNHDLQAELHHRHWKPALQSIPELD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G21920 unknown protein Lus10002068
[exp]
0 1
AT1G21000 PLATZ transcription factor fam... Lus10023411
[exp]
4.0 0.9133
AT2G27480 Calcium-binding EF-hand family... Lus10019545
[exp]
7.5 0.9081
AT5G38200 Class I glutamine amidotransfe... Lus10028493
[exp]
8.1 0.9198
AT1G70520 ASG6, CRK2 ALTERED SEED GERMINATION 6, cy... Lus10030901
[exp]
10.4 0.9177
AT1G14820 Sec14p-like phosphatidylinosit... Lus10034577
[exp]
11.7 0.9169
AT1G33030 O-methyltransferase family pro... Lus10009442
[exp]
15.7 0.9049
AT5G03380 Heavy metal transport/detoxifi... Lus10023924
[exp]
20.4 0.9100
AT5G18170 GDH1 glutamate dehydrogenase 1 (.1) Lus10020288
[exp]
22.4 0.8983
AT5G49450 bZIP ATBZIP1 basic leucine-zipper 1 (.1) Lus10016884
[exp]
22.5 0.9017
AT5G07990 CYP75B1, D501, ... TRANSPARENT TESTA 7, CYTOCHROM... Lus10021620
[exp]
24.1 0.8726

Lus10002068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.