Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50660 129 / 7e-32 unknown protein AT3G20350 116 / 1e-27 unknown protein AT3G11590 73 / 1e-13 unknown protein AT5G22310 71 / 6e-13 unknown protein AT1G11690 66 / 6e-12 unknown protein AT2G46250 55 / 6e-08 myosin heavy chain-related (.1) AT5G41620 54 / 1e-07 unknown protein AT1G64180 44 / 0.0002 intracellular protein transport protein USO1-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001144 [exp] 162 / 2e-46 ND / Lus10032637 [exp] 129 / 8e-32 AT1G50660 625 / 0.0 unknown protein Lus10002072 [exp] 113 / 8e-30 AT1G50660 48 / 5e-07 unknown protein Lus10040076 [exp] 122 / 1e-29 AT1G50660 756 / 0.0 unknown protein Lus10043111 [exp] 121 / 3e-29 AT1G50660 616 / 0.0 unknown protein Lus10021521 [exp] 117 / 7e-28 AT1G50660 750 / 0.0 unknown protein Lus10021324 [exp] 81 / 8e-16 AT3G11590 530 / 3e-180 unknown protein Lus10017001 [exp] 80 / 1e-15 AT3G11590 587 / 0.0 unknown protein Lus10013311 [exp] 73 / 2e-13 AT3G11590 332 / 1e-105 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G003200 [exp] 139 / 1e-35 AT1G50660 350 / 1e-110 unknown protein Potri.004G015800 [exp] 139 / 1e-35 AT1G50660 390 / 1e-126 unknown protein Potri.011G090100 [exp] 131 / 9e-33 AT1G50660 689 / 0.0 unknown protein Potri.004G199500 [exp] 84 / 3e-17 AT3G11590 399 / 6e-131 unknown protein Potri.016G074300 [exp] 81 / 6e-16 AT3G11590 560 / 0.0 unknown protein Potri.006G207800 [exp] 80 / 1e-15 AT3G11590 582 / 0.0 unknown protein Potri.009G160900 [exp] 77 / 1e-14 AT3G11590 399 / 9e-132 unknown protein Potri.003G147900 [exp] 73 / 2e-14 AT1G64690 66 / 2e-12 BRANCHLESS TRICHOMES, branchless trichome (.1) Potri.001G096200 [exp] 67 / 1e-11 AT5G41620 523 / 6e-180 unknown protein Potri.001G082600 [exp] 65 / 2e-11 AT1G64690 79 / 1e-16 BRANCHLESS TRICHOMES, branchless trichome (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002069 pacid=23153394 polypeptide=Lus10002069 locus=Lus10002069.g ID=Lus10002069.BGIv1.0 annot-version=v1.0 ATGGCCACCGCCACTACTTCACAACAAATGATTCCTCGGAAGGGATCACAGTCAACATCTCTCTTCCGCTACCCAACCACCCCTACCCTTGATTGGAAGT TGTTTGATGGAGCCAGTAAGGTGGTCCGTACTGCTACTTCTTCTAGGGAGCTCGCTGCTGGCTTGTGGCAGTTGCAGTTGTCAGGTGGACGACGTCGCAC TGCCAACCGTCGCCGTGGCTGTGATCATGATGTTCGACTAACAACCAATATTGGAATCGTCACTGCACCTTCCAACGCATTAATTACAACCACAGAACAT GGCGGAAATTACTACTACAACAACAATGATGGAGTACTCCTTCCTCCTCACGTCTCATCACACTTAAGCCACAGGGTCCTACCTAACGTGTATTGCATTT ATGGCACTACACAGAAAATCATGGACCAGCGACATTGTGCAATATTGTCATTGCAATCGGAGCTATTCCAAGCTGATCAGTTACGGATCCACGAGCTCCA ACAAGAGTGGCGAAACAAGATTGGAGTAGTGGTAGGTGGATTGATGGATGAGTTAAGGAGGGAGAGGAAGAGCAGGAAGCAGATGGAACTTGTCAACTGT AAATTGGTCAACGAGCTGGTGAATGTCAAGTGGCTAGCAAAGCGGTTGGGTAAGGATTTAGAGGAAGAAATGAGGGCTAGGGAACTTGTGGAGTTGGTAT GCGACGAGCTAGCTACGAAAGTTGCTGAACAGAAACGTCAAGTGGAGGAGATGAAGAAGGAGGCTATGGAACTTGAGGCTCAAGTAGGGGAAGATAGGAT GATGATGCACATGGCTGAGCTGTGGAGGGAAGAAAGGGTCCAAATGAAGATGAACGATGCTAGGTTGGCACTTGAAACCAAGTACCATCAAGTGTTGGAG ATGATTTTGCAACTCGAGGATTTTCGAAACAATGTGGAAGAAGAGACGAGTGACTTGTATACCGTAATCCAAGAAGCTGATCATCAAGGCAATGTTAAGG TTATAAAACGGTGCAATATTAATAGGGATCAAATTGGGAGTAACGTAGGCTCCTCTGTCTCAAGTCCCAACGGAAGTGAAGGCTCGATTGTAGCTCGAAA CAAGGCACATATTAGAACTGATGGATTCCGAAGGAGGCAGAGGAAGTTTGAATATTGTGTTGGGGAATGGAATTTAGCGAAGCTGTTGAATCCTCACATA ACACTAGAGGTGAAAGGCAGTATTGAATGGCCACAAGGTTCTGGAAAATACAAGTCATCGTCAAAGGGTAAGATCTCTCAAGCTAGAAAATTGACTAGGC GGAGAGCTAAAGTGATTCATGTTGTCAAACAGAGAATCAGTGCTAAAACAGCATTACCATGA
AA sequence Show only first row Show all	>Lus10002069 pacid=23153394 polypeptide=Lus10002069 locus=Lus10002069.g ID=Lus10002069.BGIv1.0 annot-version=v1.0 MATATTSQQMIPRKGSQSTSLFRYPTTPTLDWKLFDGASKVVRTATSSRELAAGLWQLQLSGGRRRTANRRRGCDHDVRLTTNIGIVTAPSNALITTTEH GGNYYYNNNDGVLLPPHVSSHLSHRVLPNVYCIYGTTQKIMDQRHCAILSLQSELFQADQLRIHELQQEWRNKIGVVVGGLMDELRRERKSRKQMELVNC KLVNELVNVKWLAKRLGKDLEEEMRARELVELVCDELATKVAEQKRQVEEMKKEAMELEAQVGEDRMMMHMAELWREERVQMKMNDARLALETKYHQVLE MILQLEDFRNNVEEETSDLYTVIQEADHQGNVKVIKRCNINRDQIGSNVGSSVSSPNGSEGSIVARNKAHIRTDGFRRRQRKFEYCVGEWNLAKLLNPHI TLEVKGSIEWPQGSGKYKSSSKGKISQARKLTRRRAKVIHVVKQRISAKTALP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50660			unknown protein		Lus10002069 [exp]	0	1
AT3G57540			Remorin family protein (.1)		Lus10026302 [exp]	4.2	0.8315
AT3G57540			Remorin family protein (.1)		Lus10042367 [exp]	8.2	0.8037
AT3G55520			FKBP-like peptidyl-prolyl cis-...		Lus10004714 [exp]	8.4	0.7741
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Lus10018027 [exp]	8.7	0.8060
AT5G65020		ANNAT2	annexin 2 (.1.2)		Lus10041696 [exp]	9.8	0.7143
AT3G18215			Protein of unknown function, D...		Lus10009010 [exp]	13.2	0.7905
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10039925 [exp]	13.4	0.8029
AT1G61600			Protein of unknown function (D...		Lus10035379 [exp]	14.4	0.8108
AT5G18130			unknown protein		Lus10005702 [exp]	16.6	0.7795
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10001594 [exp]	17.9	0.7843

Compare expression of checked genes

Lus10002069 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.