Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50660 46 / 2e-06 unknown protein AT3G20350 45 / 4e-06 unknown protein AT1G11690 39 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001144 [exp] 69 / 2e-14 ND / Lus10040076 [exp] 46 / 2e-06 AT1G50660 756 / 0.0 unknown protein Lus10032637 [exp] 45 / 6e-06 AT1G50660 625 / 0.0 unknown protein Lus10043111 [exp] 45 / 6e-06 AT1G50660 616 / 0.0 unknown protein Lus10021521 [exp] 44 / 1e-05 AT1G50660 750 / 0.0 unknown protein Lus10002069 [exp] 0 / 1 AT1G50660 147 / 6e-38 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G090100 [exp] 47 / 6e-07 AT1G50660 689 / 0.0 unknown protein Potri.004G015800 [exp] 46 / 2e-06 AT1G50660 390 / 1e-126 unknown protein Potri.011G003200 [exp] 45 / 4e-06 AT1G50660 350 / 1e-110 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002072 pacid=23153392 polypeptide=Lus10002072 locus=Lus10002072.g ID=Lus10002072.BGIv1.0 annot-version=v1.0 ATGGAACTCGAAGCTCAAGTAGGGGAAGAGAGGATGATGATGCACATGGCTGAGTTGTGGAGGAAAGAATGGGTCCAAATGAAGATGAACGATTCTAAGT TGGCACTTGAAACCAAGGGTCAAATTGAGGGCAATGTAGGTTCCTCCGTCTCAAGTCCCAACGGAAGTGAAGACTCGATTGTAGCTGGGAACAAGGCACA TACTAGAACTGACGGATTCGGAAGGAGGCAGGGGAAGCCTGAATATTGTGTTGGGGAATGGAACTTAGCAAAGCTGTTGAATCCTGACATCACTAGAGGG GTGAAGGCAGCATTGAATGGCCACAAGGTTCTGCCAAATGCAAATCATCGTCAAAGGGTAAGATCTCTCAAGCTAGAATATAAAATAGACAGAGGACTAA AGTAA
AA sequence Show only first row Show all	>Lus10002072 pacid=23153392 polypeptide=Lus10002072 locus=Lus10002072.g ID=Lus10002072.BGIv1.0 annot-version=v1.0 MELEAQVGEERMMMHMAELWRKEWVQMKMNDSKLALETKGQIEGNVGSSVSSPNGSEDSIVAGNKAHTRTDGFGRRQGKPEYCVGEWNLAKLLNPDITRG VKAALNGHKVLPNANHRQRVRSLKLEYKIDRGLK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50660			unknown protein		Lus10002072 [exp]	0	1
					Lus10028295 [exp]	1.4	0.9793
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10038344 [exp]	2.4	0.9580
					Lus10001343 [exp]	2.4	0.9617
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10023601 [exp]	3.5	0.9450
AT1G01420		UGT72B3	UDP-glucosyl transferase 72B3 ...		Lus10005334 [exp]	4.6	0.9020
AT3G10520		ATGLB2, ARATHGL...	NON-SYMBIOTIC HAEMOGLOBIN 2, A...		Lus10038655 [exp]	5.0	0.9413
AT4G18590			Nucleic acid-binding, OB-fold-...		Lus10022705 [exp]	5.5	0.9342
AT2G44060			Late embryogenesis abundant pr...		Lus10019367 [exp]	5.7	0.9008
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10033564 [exp]	7.3	0.8794
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Lus10003202 [exp]	9.6	0.6955

Compare expression of checked genes

Lus10002072 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.