Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11700 141 / 4e-42 Protein of unknown function, DUF584 (.1) AT1G61930 140 / 1e-41 Protein of unknown function, DUF584 (.1) AT4G21930 105 / 2e-28 Protein of unknown function, DUF584 (.1) AT4G04630 77 / 2e-17 Protein of unknown function, DUF584 (.1) AT4G21970 74 / 2e-16 Protein of unknown function, DUF584 (.1) AT3G45210 72 / 5e-16 Protein of unknown function, DUF584 (.1) AT2G28400 73 / 6e-16 Protein of unknown function, DUF584 (.1) AT5G60680 72 / 1e-15 Protein of unknown function, DUF584 (.1) AT5G03230 68 / 4e-14 Protein of unknown function, DUF584 (.1) AT3G15040 66 / 8e-13 Protein of unknown function, DUF584 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020047 [exp] 127 / 8e-37 AT1G61930 124 / 8e-36 Protein of unknown function, DUF584 (.1) Lus10006775 [exp] 120 / 3e-35 AT1G61930 110 / 4e-32 Protein of unknown function, DUF584 (.1) Lus10041309 [exp] 82 / 2e-19 AT5G60680 137 / 5e-42 Protein of unknown function, DUF584 (.1) Lus10021474 [exp] 80 / 2e-18 AT5G60680 138 / 6e-42 Protein of unknown function, DUF584 (.1) Lus10019936 [exp] 77 / 1e-17 AT5G03230 99 / 1e-26 Protein of unknown function, DUF584 (.1) Lus10026507 [exp] 74 / 2e-15 AT5G03230 97 / 1e-24 Protein of unknown function, DUF584 (.1) Lus10006781 [exp] 72 / 2e-15 AT4G21970 128 / 6e-38 Protein of unknown function, DUF584 (.1) Lus10004207 [exp] 72 / 4e-15 AT3G15040 110 / 1e-29 Protein of unknown function, DUF584 (.1) Lus10020043 [exp] 71 / 6e-15 AT4G21970 127 / 1e-37 Protein of unknown function, DUF584 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G003300 [exp] 188 / 3e-60 AT1G11700 161 / 6e-50 Protein of unknown function, DUF584 (.1) Potri.004G015700 [exp] 186 / 3e-59 AT1G11700 151 / 5e-46 Protein of unknown function, DUF584 (.1) Potri.011G004100 [exp] 82 / 5e-19 AT4G04630 125 / 1e-36 Protein of unknown function, DUF584 (.1) Potri.004G014000 [exp] 77 / 2e-17 AT4G04630 124 / 4e-36 Protein of unknown function, DUF584 (.1) Potri.009G014100 [exp] 76 / 4e-17 AT3G45210 124 / 2e-36 Protein of unknown function, DUF584 (.1) Potri.016G089900 [exp] 74 / 1e-16 AT5G03230 115 / 6e-33 Protein of unknown function, DUF584 (.1) Potri.004G211100 [exp] 74 / 4e-16 AT5G60680 120 / 1e-34 Protein of unknown function, DUF584 (.1) Potri.006G127900 [exp] 71 / 3e-15 AT5G03230 122 / 1e-35 Protein of unknown function, DUF584 (.1) Potri.016G076300 [exp] 71 / 6e-15 AT3G15040 90 / 9e-22 Protein of unknown function, DUF584 (.1) Potri.006G209500 [exp] 50 / 2e-07 AT3G15040 65 / 3e-12 Protein of unknown function, DUF584 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04520 [flax] [poplar] Senescence_reg Senescence regulator
Representative CDS sequence Show only first row Show all	>Lus10002073 pacid=23153381 polypeptide=Lus10002073 locus=Lus10002073.g ID=Lus10002073.BGIv1.0 annot-version=v1.0 ATGTCCAAAGGCAACAGGCCAAGGTTGTTGACCACCAGTCGCAGCGAACGATTACTCGGGAGCTACCGTAGCTACAGCAACGGGGGCAACCATGACATCA CCGCTGACGACTCATCGGAGCTCGGTGAGGAGGACGTTTGGTCCACCGTCGACAACTATGATCACTACCATATGTCCAATAGAAGCGACTCGATGCGCGA GTGGGGTTCCTTTGCTAACAACATGTCGACCCGACATAGCCCCCACAGAGACAAGGATGGCTACGTTGGAGGTTTGTCCTTAGCGTTCGAAGACTCGGGC AATACAACGATGTCGACTTCAGGGACAACGATTGTGCACCAATTCCGAGGTCACAAAACGGTTGCCAACAAACAGCCAAGGCAAATTGCTTCATCAGCTC CAGTGAACGTGCCGGATTGGGGAAAGATTGTACGGACCAACTCGATGGAATCGTTGCATGATGAGATGAACGGTGGCAGCGGGACCTTTGGCGAAGACGA ACGTGACTCTGAGATGATGCCGCCCCACGAGTATCTAGCGCGTGCGAACTCAAGAAACCGGAAAGTAAGTGGCGTCTCGGTTTTCGAGGGGGTTGGCCGG ACCCTTAAAGGACGGGACCTTAGGCGCGTAAGGGATGCGGTGTGGAGCCAGACGGGCTTTAACGGCTGA
AA sequence Show only first row Show all	>Lus10002073 pacid=23153381 polypeptide=Lus10002073 locus=Lus10002073.g ID=Lus10002073.BGIv1.0 annot-version=v1.0 MSKGNRPRLLTTSRSERLLGSYRSYSNGGNHDITADDSSELGEEDVWSTVDNYDHYHMSNRSDSMREWGSFANNMSTRHSPHRDKDGYVGGLSLAFEDSG NTTMSTSGTTIVHQFRGHKTVANKQPRQIASSAPVNVPDWGKIVRTNSMESLHDEMNGGSGTFGEDERDSEMMPPHEYLARANSRNRKVSGVSVFEGVGR TLKGRDLRRVRDAVWSQTGFNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61930			Protein of unknown function, D...		Lus10002073 [exp]	0	1
AT4G02090			unknown protein		Lus10010014 [exp]	2.0	0.8734
AT5G43180			Protein of unknown function, D...		Lus10025134 [exp]	4.2	0.8080
AT1G54120			unknown protein		Lus10013152 [exp]	6.3	0.8560
AT2G16760			Calcium-dependent phosphotries...		Lus10015347 [exp]	7.7	0.7885
					Lus10025897 [exp]	19.0	0.8259
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10004202 [exp]	21.4	0.8035
AT5G11260	bZIP	TED5, HY5	REVERSAL OF THE DET PHENOTYPE ...		Lus10002900 [exp]	23.1	0.7319
AT2G37170		PIP2;2, PIP2B	PLASMA MEMBRANE INTRINSIC PROT...		Lus10019934 [exp]	23.9	0.7710
AT2G39010		PIP2E, PIP2;6	PLASMA MEMBRANE INTRINSIC PROT...		Lus10021475 [exp]	26.5	0.7894
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10012059 [exp]	26.9	0.8260

Compare expression of checked genes

Lus10002073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.