Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04720 290 / 9e-96 CPK21 calcium-dependent protein kinase 21 (.1) AT1G50700 284 / 1e-93 CPK33 calcium-dependent protein kinase 33 (.1) AT3G20410 283 / 4e-93 CPK9 calmodulin-domain protein kinase 9 (.1) AT4G21940 275 / 1e-89 CPK15 calcium-dependent protein kinase 15 (.1.2) AT1G61950 256 / 3e-82 CPK19 calcium-dependent protein kinase 19 (.1) AT5G12180 251 / 8e-81 CPK17 calcium-dependent protein kinase 17 (.1) AT1G76040 250 / 5e-80 CPK29 calcium-dependent protein kinase 29 (.1.2) AT5G19360 249 / 7e-80 CPK34 calcium-dependent protein kinase 34 (.1) AT4G04740 231 / 3e-73 CPK23, ATCPK23 calcium-dependent protein kinase 23 (.1.2) AT4G04700 228 / 5e-72 CPK27 calcium-dependent protein kinase 27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001145 [exp] 366 / 8e-130 AT4G04720 324 / 4e-109 calcium-dependent protein kinase 21 (.1) Lus10020046 [exp] 296 / 6e-98 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10006777 [exp] 295 / 1e-97 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10021531 [exp] 285 / 7e-94 AT3G20410 831 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10040071 [exp] 285 / 1e-93 AT3G20410 825 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10017251 [exp] 270 / 4e-88 AT1G76040 807 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10032640 [exp] 266 / 2e-86 AT3G20410 790 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10005619 [exp] 268 / 7e-84 AT1G76040 773 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10023346 [exp] 247 / 2e-79 AT5G12180 780 / 0.0 calcium-dependent protein kinase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G003400 [exp] 301 / 5e-100 AT4G04720 815 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.004G015500 [exp] 301 / 6e-100 AT4G04720 797 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.005G245000 [exp] 264 / 9e-86 AT1G76040 729 / 0.0 calcium-dependent protein kinase 29 (.1.2) Potri.002G017000 [exp] 262 / 6e-85 AT1G76040 758 / 0.0 calcium-dependent protein kinase 29 (.1.2) Potri.001G274700 [exp] 241 / 8e-77 AT5G12180 909 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.009G069200 [exp] 240 / 1e-76 AT5G12180 914 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.001G097400 [exp] 227 / 1e-71 AT4G23650 781 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.003G134000 [exp] 226 / 3e-71 AT4G23650 776 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.019G083200 [exp] 221 / 2e-69 AT4G09570 835 / 0.0 calcium-dependent protein kinase 4 (.1) Potri.004G207300 [exp] 218 / 9e-68 AT2G17290 969 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10002074 pacid=23153388 polypeptide=Lus10002074 locus=Lus10002074.g ID=Lus10002074.BGIv1.0 annot-version=v1.0 ATGGGATGTTGCAGTAGCAAAGGAGGAGACTCTGCTGCTGCTTCCAAGCAGCCAGACTTCAATGGCTACACAGCAGCTCACCCTGTTCCCACCTACCAAC AACAACAACATCAACATCCACATCAGCCGACACACTCCCAACAGCCGCAGCCGGTAGTGGCCACCAAGCCAGCTGCATCGACTCCCACGGCAAGGCCTGC AGTTCAGAAATCAGGGGACACGATCTTGGAGAAGCCATTTGAAGACGTGAGGCAGTTGTACACACTGGGGAAAGAATTGGGTCGAGGTCAGTTCGGCATT ACTTACCTGTGTACCGAGAATTCCACAGGACATACCTACGCCTGCAAATCCATACTGAAGAGAAAACTGAAGAGCAAGAGCGATAGGGAGGATGTGAAGA GGGAGATTCAGATTATGCAGCACTTGTCTGGTCAACCAAACATTGTTGAGTTCAAAGGTTGCTACGAGGACAGACAATCGGTGCATTTGGTGATGGAGCT ATGCGCTGGCGGGGAGCTTTTTGATCGGATTATTGCAAAGGGTCATTACTCCGAGAAAGATGCTGCTAAGATTTGCAGGGAGATTGTCAATGTGGTCCAC GCTTGCCATTTTATGGGGGTTATGCACCGTGATCTCAAGCCTGAGAATTTCCTCTTGTCTTCCAAGGATGAAGACGCTACCATTAAAGCCACCGACTTTG GACTCTCTGTTTTCATTGAAGAAGGCAAATAA
AA sequence Show only first row Show all	>Lus10002074 pacid=23153388 polypeptide=Lus10002074 locus=Lus10002074.g ID=Lus10002074.BGIv1.0 annot-version=v1.0 MGCCSSKGGDSAAASKQPDFNGYTAAHPVPTYQQQQHQHPHQPTHSQQPQPVVATKPAASTPTARPAVQKSGDTILEKPFEDVRQLYTLGKELGRGQFGI TYLCTENSTGHTYACKSILKRKLKSKSDREDVKREIQIMQHLSGQPNIVEFKGCYEDRQSVHLVMELCAGGELFDRIIAKGHYSEKDAAKICREIVNVVH ACHFMGVMHRDLKPENFLLSSKDEDATIKATDFGLSVFIEEGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10002074 [exp]	0	1
AT3G49650			P-loop containing nucleoside t...		Lus10019245 [exp]	8.8	0.9165
AT1G23170			Protein of unknown function DU...		Lus10021774 [exp]	10.3	0.9130
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10001145 [exp]	13.4	0.8540
AT3G53110		LOS4	LOW EXPRESSION OF OSMOTICALLY ...		Lus10014393 [exp]	14.5	0.9050
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10041425 [exp]	15.6	0.8683
AT3G57890			Tubulin binding cofactor C dom...		Lus10021031 [exp]	17.6	0.8726
AT1G12470			zinc ion binding (.1)		Lus10033725 [exp]	20.1	0.8989
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10029803 [exp]	20.1	0.9068
AT1G45000			AAA-type ATPase family protein...		Lus10017475 [exp]	20.5	0.8918
AT5G59830			unknown protein		Lus10025307 [exp]	21.4	0.8456

Compare expression of checked genes

Lus10002074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.