Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04720 536 / 0 CPK21 calcium-dependent protein kinase 21 (.1) AT4G21940 513 / 0 CPK15 calcium-dependent protein kinase 15 (.1.2) AT1G50700 496 / 1e-175 CPK33 calcium-dependent protein kinase 33 (.1) AT3G20410 491 / 2e-173 CPK9 calmodulin-domain protein kinase 9 (.1) AT4G04740 473 / 9e-167 CPK23, ATCPK23 calcium-dependent protein kinase 23 (.1.2) AT1G76040 455 / 1e-162 CPK29 calcium-dependent protein kinase 29 (.1.2) AT1G61950 462 / 4e-162 CPK19 calcium-dependent protein kinase 19 (.1) AT4G23650 441 / 3e-154 CDPK6, CPK3 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) AT5G19360 431 / 4e-150 CPK34 calcium-dependent protein kinase 34 (.1) AT5G12180 430 / 1e-149 CPK17 calcium-dependent protein kinase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021531 [exp] 527 / 0 AT3G20410 831 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10040071 [exp] 524 / 0 AT3G20410 825 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10006777 [exp] 519 / 0 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10020046 [exp] 514 / 0 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10032640 [exp] 506 / 7e-180 AT3G20410 790 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10017251 [exp] 465 / 2e-163 AT1G76040 807 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10017537 [exp] 442 / 2e-155 AT4G23650 803 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Lus10001146 [exp] 432 / 1e-154 AT1G50700 400 / 5e-139 calcium-dependent protein kinase 33 (.1) Lus10038460 [exp] 429 / 3e-149 AT5G12180 916 / 0.0 calcium-dependent protein kinase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G003400 [exp] 545 / 0 AT4G04720 815 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.004G015500 [exp] 525 / 0 AT4G04720 797 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.002G017000 [exp] 468 / 2e-164 AT1G76040 758 / 0.0 calcium-dependent protein kinase 29 (.1.2) Potri.005G245000 [exp] 452 / 2e-158 AT1G76040 729 / 0.0 calcium-dependent protein kinase 29 (.1.2) Potri.001G097400 [exp] 442 / 8e-155 AT4G23650 781 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.003G134000 [exp] 437 / 8e-153 AT4G23650 776 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.009G069200 [exp] 434 / 3e-151 AT5G12180 914 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.001G274700 [exp] 426 / 7e-148 AT5G12180 909 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.010G244800 [exp] 397 / 4e-136 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.008G014700 [exp] 396 / 9e-136 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10002075 pacid=23153386 polypeptide=Lus10002075 locus=Lus10002075.g ID=Lus10002075.BGIv1.0 annot-version=v1.0 ATGACAAATTCCTTTGCAGGAAAAGTATACAGAGACATAGTCGGCAGTGCGTACTATGTTGCTCCTCAAGTCTTGCGCCGTAGTTATGGGAAGGAGATTG ATATTTGGAGTGCAGGTGTTATTTTGTACATTCTGCTCAGTGGCGTGCCTCCGTTTTGGGCAGAGAATGAAAAAGGAATATTTGATGCTGTTCTCCAAGG AGAGATTGATTTTGAAAGTGATCCCTGGCCTACTATATCTGACAGTGCCAAGGATCTGATTAGGAAGATGCTCACTCAGGATCCAAAAAAGCGTTTGACT TCTGCACAAGTTCTTGAGCATCCGTGGATCAAGGGTGGTGCAGCATCAGACAAACCAATTGACAGTGCGGTGTTGTCTAGAATGAAGCAATTCAGGGCAA TGAATAATATGAAGAAACTTGCCTTGAAGGTTATTGCGGAAAATCTTTCTGAAGAAGAAATTAGAGGTCTGAAAACAATGTTCACAAACCTTGACACTGA CAAGAGCGGAACTATTACCTATGAAGAGCTGAAGACAGGTTTGGCTCGATTAGGATCGAAGCTCTCTGAAGCTGAGGTTAAGCAACTCATGGAAGCTGCT GACGTGGATGGAAATGGAACAATTGACTATACAGAATTCATCTCTGCAACAATGCATAGATACAAGCTTGAAAGAGATGAGCATCTGTACACAGCATTTC AGCACTTTGATAAGGATGGCAGTGGGTACATAACTAGAGATGAACTAGAATCCGCAATGCTGGAATATGGAATAGGGGATGAGGCCAGCATAAAGCAGAT CATTACTGAAGTCGATACAGACAATGATGGGAAAATCAACTACGATGAATTCTGTGCCATGATGAGAAGTGGATCGGAAGTTCAAGGGAAACTTTTGTAA
AA sequence Show only first row Show all	>Lus10002075 pacid=23153386 polypeptide=Lus10002075 locus=Lus10002075.g ID=Lus10002075.BGIv1.0 annot-version=v1.0 MTNSFAGKVYRDIVGSAYYVAPQVLRRSYGKEIDIWSAGVILYILLSGVPPFWAENEKGIFDAVLQGEIDFESDPWPTISDSAKDLIRKMLTQDPKKRLT SAQVLEHPWIKGGAASDKPIDSAVLSRMKQFRAMNNMKKLALKVIAENLSEEEIRGLKTMFTNLDTDKSGTITYEELKTGLARLGSKLSEAEVKQLMEAA DVDGNGTIDYTEFISATMHRYKLERDEHLYTAFQHFDKDGSGYITRDELESAMLEYGIGDEASIKQIITEVDTDNDGKINYDEFCAMMRSGSEVQGKLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10002075 [exp]	0	1
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10043449 [exp]	1.0	0.9587
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012148 [exp]	1.4	0.9581
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Lus10016249 [exp]	3.5	0.9554
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Lus10008824 [exp]	3.9	0.9386
AT1G52140			unknown protein		Lus10006040 [exp]	4.2	0.9473
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10021103 [exp]	4.5	0.9483
AT5G10830			S-adenosyl-L-methionine-depend...		Lus10024476 [exp]	4.9	0.9507
AT4G33740			unknown protein		Lus10020507 [exp]	6.5	0.9462
AT3G10120			unknown protein		Lus10027167 [exp]	6.6	0.9433
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10002663 [exp]	8.1	0.9429

Compare expression of checked genes

Lus10002075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.