Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64570 536 / 1e-167 DUO3 DUO POLLEN 3, Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001147 [exp] 1274 / 0 AT1G64570 540 / 4e-171 DUO POLLEN 3, Homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G003500 [exp] 826 / 0 AT1G64570 505 / 5e-156 DUO POLLEN 3, Homeodomain-like superfamily protein (.1) Potri.004G015034 [exp] 178 / 2e-50 AT1G64570 151 / 1e-41 DUO POLLEN 3, Homeodomain-like superfamily protein (.1) Potri.004G015001 [exp] 62 / 6e-10 AT1G64570 69 / 3e-13 DUO POLLEN 3, Homeodomain-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002076 pacid=23153383 polypeptide=Lus10002076 locus=Lus10002076.g ID=Lus10002076.BGIv1.0 annot-version=v1.0 ATGCCTTCGTGCATGACTGAGACTGACCAACCGGAGGAACCACGATATGGTTCACCCAGTGACGAGAGTCCTATGGTCGCGGGAGAGAATGAGAATGAAA ATAGTGATGAGGAGGAAGAAGAAGAGGATGTCGATTTCAATCCATTCTTGAAAGGGACTCCTTCACCTGAAGCTTCTTCAAGTTTGAGCTCGGAAATGGA AGGTCCAGATGATACTTGTTCCACAAAGCCAATGGGTGAGCTTCAGAACTATGACGATGTGGGACATTCTGAACATGGAGAAGAGGTTGTAATGCAAACC GCAGTTTCTTCTTCTGAGGGTGAACCAAAATCGGGGAAGCCTCTTCAAAGCAGAGGGAACAAGAGAAAATTGGATTCCACTTCTGAGTTGGAAAATGACC CCGTGAAGAACGAATTTAATGTTAATGATATTGAAGATGATAATGAAGACGCCATCTGCAAGCGCACTAGAGCCCGTTATTCACTTGCAAGATTCACACT TGATGAACTTGAGACTTTTCTCCAGGAAACAGATGACGAGGATGATCTACAGAATGTCGATGATGAAGAAGAGTACAGGAAGTTTCTTGCTGCTGTTTTA CACTCTGGAGAAGGTGATGATCAATCAGCACAAGCTCCAGATAAATGTGATGATGAGGATGAGGAGAACGATGCAGATTTTGAGATAGAACTTGAAGAGC TGCTTGATAGTGATCTTGATGATGCGATTAGAGATAAGGATCAGAAAATGAATTATGAGGAAGGAAGGCGCAGACCAGAAACCAGACAGAATAGAAGCCG CAAAGCTTCTGTTAGGCATAAGAAGAAGCTTTTGGAAGAGGGAAGGAGCCCGCTGCGTCCCCGTCTACCTATGTTACCGAATGGTGGGATGGCCTCATTT CCCAGTGTATATGCCAACACTTTGGCTCCTGAAACTGCTCTTATGTATCAATCGTCAACAACAGAACATACACTAATAAATGGATTTACCCTGCAGCAGA TCGGTCAGCTGCATACTTTAATACACGAACATCTGCAGCTGCTTATCCAAGTACTTTGTCTTTGTTTTAACGATTCCTCCCGACAGCATATTGCCTCTCG GACTCATGGATTGATTTCAGAGATTTTGCACAAATGCAGTGAAGTAAGGACATGGAAAACTAAATCATTTCCTGGCATTTGCTTCCAACCTCCTTACCTG CGTCCAGCAGTTGCAGATGCCAACCATCTACCTGCACAGTCTTCTACAGAATCATCCATCGGTCGACTCTCACAAATGCTCCTCACACAAAACTCTTCTA AGGAGAGTGTCGAGCCTGCTTTGGATATGCAGAAGAATACTTCACAAGCTGTTGAATCTTTCTGGGTCCCTTCGGTTAGGGGGCCGATATTGTCTGTTCT GGATGTTGCTCCGCTTCATTTGGTGGGAAAGTTTGTGGAAGATTTTTGCATTGCTGGGAAAGAGTACCAAAGGCGTTGTGCTGAACCTAGTTTTGATGCT CAATACGAGAAGGAACCCCTCTTCCAACTTCCTTATTATCCATCACTTTGTGAGGTAAATGGTGACGTTCAACGAGCAAATGACTCTTCTGCAACAGACG CAGCACCATCAACACCTGGCCAACAACTGCCTAAGAAGACACGGGCTGCAGCCATTGTGGAACGTGCCAAGAAGCAATCAATTGCTTTGGTTCCAAAAGA TGCTAGCAAGTTGGCTCAGAGATTTTCCCCATTTTTCAATCCAGTATTGTTTCCCCATAAGTCACCCCCTACGGCTGTAACAAATAGGATCCTGTTTACT GATGCAGAGGATGAATTGTTGGCATTGGGAATGATCGAATATAATACAGATTGGAAGGCAATTCAGCAGCGATTCCTTCCTTGCAAATCCAAGCACCAGA TTTTTGTTCGGCAGAAAAATCGTTGTTCATCCAAGGCACCAGAAAATCCCATAAAGACAGTTCGTAAGATGAAAACCTCTCCATTAAGTGCTGAAGAAAT CAAGCGTATTCAAGAGGGACTTCGAGTCTGCAAACTGGACTGGATGTCGATATGGAAATTCATTGTCCCTTACAGAGACCCTTCTTTATTACCTCGGCAA TGGCGGCTTGCCCTTGGTACTCAGAAGTCATATAAACAAGATGCTGATAAAAAGGAGAGACGGCGAATATATGAATCAAACAGGAGGAGCAAAGCTGCAG AATTGTTAAATCAGCAAACAACGGTGGATAGAGAGGAAAATCAGCTTGGTAGCAGCAATTTACATAAGGGAAGAGACCATTCTGTAGAAAATGTGAGCGA ATCTTATGTTCATCAGGCATTTTTGGCCGAGTTGGCACCAGTCTCTTCGAGTCCTATATTGCCTGCTAATCTTGTAGAAAAAGGCCTGCCAGGAAATTCA TCAAATGAAAGTCATCAGTTAGCTACTGGTGAAGCTCAGAACCAGAGTGGTAACATGCATGTACTTTCATGTACAATGTCTCCTTTCACTCAGTCTAGAA ACTCTCCTGATACTACTCAACAAAACCAACCAACTTCCCAAGTGCCGGTGGATACTTCCAAGCCAAAAATCTATTCGTGGCCACACCGAACTCATAATGT TGCTGGTGCACGCTTGGTTAAATTAGCACCAGAGCTACCTCCTGTGAATCTTCCACCATCTGTTCGTGTAATATCCCAGTCAGCTTTCAGAAACAACCAA TCTGGAACATTGTCTAGGGTATCTAGTACAGGTTGTAAGAGTGATTCTGGAAAAGAAGGTATTCCCCCTCGGCTTCTGGAGAATATAAATCAGAGAGCCA CCAGTTCTATACCAATTACAGGGATTTCAGGTGACAGAGAACTTAAGAACACCACAAATCCATGTAGAGAAGATTCATCTGGCACCAATGATGCATGTCA GGAAGAAAGTGAAAATAACTCCGACCTTCAGATGCATCCTTTATTGTTCAAGACCGCTGATGCTGAGCCCCTTCTTTGTTATCCATTGAAGTATACCTCT GATTCTTCTAGATCGTTACATCTAAATCTCAGTCTCTTTCATAATCCCCGCCAGATAAACTCTGCTCGTGATTCTTATGTTAAATCTGCCAGAACTGAGG AATGTTCTCTAGCATCAGGTGGCATCGACTTTCACCCTCTTCTGCAACAAGTTGATGGAGGAAAGAGTAACTCTGTAGTGCCTCCCTCTAATATCTACCA ATCTGTTTCCCTGGGTGACAAACCTCGGCAATATCCCTCTAATATCTACCAATCTGTTTCCCTGGGTGACAAACCTCGGCAATATCCCTCTAATATCTAC CAATCTGTTTCCCTGGGTGACAAACCTCGGCAATATCCCTCTAATATCTACCAATCTGTTTCCCTGGGTGACAAACCTCGGCAATATCCCTCTAATATCT ACCAATCTGTTTCCCTGGGTGACAAACCTCGGCAATATCCCTCTAATATCTACCAATCTGTTTCCCTGGGTGACAAACCTCGGCAATATCCCTCTAATAT CTACCAATCTGTTTCCCTGGGTGACAAACCTCGGCAATATCCCTCTAATATCTACCAATCTGTTTCCCTGGGTGACAAACCTCGGCAATATCCCTCTAAT ATCTACCAATCTGTTTCCCTGGGTGACAAACCTCGGCAATATCCCTCTAATATCTACCAATCTGTTTCCCTGGGTGACAAACCTCGGCAATATCCCTCTA ATATCTACCAATCTGTTTCCCTGGGTGACAAACCTCGGCAATATCCCTCTAATATCTACCAATCTGTTTCCCTGGGTGACAAAACTCAGCAATATCCGTA TCCTGGTGTTGTTGCCCAGAATACCACGGCATCTAAAGTGATTAGCCAGATTGTTCAAGCTAATGAATTGGACCTTGAGATTCATTTAAGTTCTGCATCT ATAAATGAGAAGAAAAGGAGGCTGAGAGATGGTAATATAGTTAATGAATCAACTTCTGTGAAAGGCTCCATGGATTGTGTTAATGCCATGGAAACTTGTG AAACTAGGACTCCGTGCCATCAACTCAACGAGAGGAGACCTGTGGTTAAGAGCAGCCTTATTTCAGAGGCTGATGCATCTAGGCCGGTAAGCAATATTGA TGATGTGGGTGGTGAATCTCAGCAAGAGATTGTGATGGAACAAGAAGAGCTGAGTGACTCTGATGAAGAATTTGAAGAAAATGTAGAATTCGAGTGTGAG GAGATGACTGATTCCGAGGGAGAAGAGCGTTCTGGCTCTAAATCATTGAGGAAACCTGCCAAAAAGTAG
AA sequence Show only first row Show all	>Lus10002076 pacid=23153383 polypeptide=Lus10002076 locus=Lus10002076.g ID=Lus10002076.BGIv1.0 annot-version=v1.0 MPSCMTETDQPEEPRYGSPSDESPMVAGENENENSDEEEEEEDVDFNPFLKGTPSPEASSSLSSEMEGPDDTCSTKPMGELQNYDDVGHSEHGEEVVMQT AVSSSEGEPKSGKPLQSRGNKRKLDSTSELENDPVKNEFNVNDIEDDNEDAICKRTRARYSLARFTLDELETFLQETDDEDDLQNVDDEEEYRKFLAAVL HSGEGDDQSAQAPDKCDDEDEENDADFEIELEELLDSDLDDAIRDKDQKMNYEEGRRRPETRQNRSRKASVRHKKKLLEEGRSPLRPRLPMLPNGGMASF PSVYANTLAPETALMYQSSTTEHTLINGFTLQQIGQLHTLIHEHLQLLIQVLCLCFNDSSRQHIASRTHGLISEILHKCSEVRTWKTKSFPGICFQPPYL RPAVADANHLPAQSSTESSIGRLSQMLLTQNSSKESVEPALDMQKNTSQAVESFWVPSVRGPILSVLDVAPLHLVGKFVEDFCIAGKEYQRRCAEPSFDA QYEKEPLFQLPYYPSLCEVNGDVQRANDSSATDAAPSTPGQQLPKKTRAAAIVERAKKQSIALVPKDASKLAQRFSPFFNPVLFPHKSPPTAVTNRILFT DAEDELLALGMIEYNTDWKAIQQRFLPCKSKHQIFVRQKNRCSSKAPENPIKTVRKMKTSPLSAEEIKRIQEGLRVCKLDWMSIWKFIVPYRDPSLLPRQ WRLALGTQKSYKQDADKKERRRIYESNRRSKAAELLNQQTTVDREENQLGSSNLHKGRDHSVENVSESYVHQAFLAELAPVSSSPILPANLVEKGLPGNS SNESHQLATGEAQNQSGNMHVLSCTMSPFTQSRNSPDTTQQNQPTSQVPVDTSKPKIYSWPHRTHNVAGARLVKLAPELPPVNLPPSVRVISQSAFRNNQ SGTLSRVSSTGCKSDSGKEGIPPRLLENINQRATSSIPITGISGDRELKNTTNPCREDSSGTNDACQEESENNSDLQMHPLLFKTADAEPLLCYPLKYTS DSSRSLHLNLSLFHNPRQINSARDSYVKSARTEECSLASGGIDFHPLLQQVDGGKSNSVVPPSNIYQSVSLGDKPRQYPSNIYQSVSLGDKPRQYPSNIY QSVSLGDKPRQYPSNIYQSVSLGDKPRQYPSNIYQSVSLGDKPRQYPSNIYQSVSLGDKPRQYPSNIYQSVSLGDKPRQYPSNIYQSVSLGDKPRQYPSN IYQSVSLGDKPRQYPSNIYQSVSLGDKPRQYPSNIYQSVSLGDKPRQYPSNIYQSVSLGDKTQQYPYPGVVAQNTTASKVISQIVQANELDLEIHLSSAS INEKKRRLRDGNIVNESTSVKGSMDCVNAMETCETRTPCHQLNERRPVVKSSLISEADASRPVSNIDDVGGESQQEIVMEQEELSDSDEEFEENVEFECE EMTDSEGEERSGSKSLRKPAKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64570		DUO3	DUO POLLEN 3, Homeodomain-like...		Lus10002076 [exp]	0	1
AT1G27595			unknown protein		Lus10007230 [exp]	3.0	0.9292
AT3G46920			Protein kinase superfamily pro...		Lus10040006 [exp]	4.2	0.9188
AT1G27595			unknown protein		Lus10028229 [exp]	4.9	0.9252
AT1G64570		DUO3	DUO POLLEN 3, Homeodomain-like...		Lus10001147 [exp]	5.0	0.9188
AT4G14920			Acyl-CoA N-acyltransferase wit...		Lus10006110 [exp]	7.7	0.9024
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10008949 [exp]	8.2	0.9192
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10016788 [exp]	9.2	0.8906
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10011285 [exp]	9.2	0.9205
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10016663 [exp]	9.2	0.8993
AT2G36480			ENTH/VHS family protein (.1.2....		Lus10027715 [exp]	9.3	0.8847

Compare expression of checked genes

Lus10002076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.