Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001147 [exp] 82 / 2e-19 AT1G64570 540 / 4e-171 DUO POLLEN 3, Homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002077 pacid=23153391 polypeptide=Lus10002077 locus=Lus10002077.g ID=Lus10002077.BGIv1.0 annot-version=v1.0 ATGTTGCAGACACAAAGGAGCCTTGGGGGACTTTGTGTCACANNTGGGGACTGCGCTTGTACGGAAAATCTTTGTGCTGGGACAGAGAAGGTTGTAAGTG ACAACAGTAGTGCGGCAGGGATAGGGAGTCCTGCGTTGAAGTTAAGTCTGACTATGCTGGGGAAGGATGGAGATAGTAACACTTGGTTAAGATTAGACTA CCCTGTTGGTGGTGGGCGGATTCTGAATTCTGATATCATCATCTTAAGTCCTAAGGCTGATGCTCTCTTCCTAGACTAA
AA sequence Show only first row Show all	>Lus10002077 pacid=23153391 polypeptide=Lus10002077 locus=Lus10002077.g ID=Lus10002077.BGIv1.0 annot-version=v1.0 MLQTQRSLGGLCVTXGDCACTENLCAGTEKVVSDNSSAAGIGSPALKLSLTMLGKDGDSNTWLRLDYPVGGGRILNSDIIILSPKADALFLD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10002077 [exp]	0	1
AT2G17280			Phosphoglycerate mutase family...		Lus10032820 [exp]	3.0	0.6543
AT3G11010		AtRLP34	receptor like protein 34 (.1)		Lus10002752 [exp]	3.5	0.5496
AT1G19835			Plant protein of unknown funct...		Lus10033813 [exp]	10.7	0.5216
AT1G58025			DNA-binding bromodomain-contai...		Lus10035797 [exp]	19.7	0.5871
AT2G29620			unknown protein		Lus10001202 [exp]	25.0	0.4596
AT1G07480			Transcription factor IIA, alph...		Lus10004981 [exp]	39.5	0.5146
AT2G34440	MADS	AGL29	AGAMOUS-like 29 (.1)		Lus10016563 [exp]	43.1	0.4830
AT4G17920			RING/U-box superfamily protein...		Lus10004572 [exp]	66.8	0.4545
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10024763 [exp]	101.2	0.3904
AT5G05480			Peptide-N4-(N-acetyl-beta-gluc...		Lus10007519 [exp]	103.0	0.3520

Compare expression of checked genes

Lus10002077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.