Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04640 587 / 0 ATPC1 ATPase, F1 complex, gamma subunit protein (.1) AT1G15700 480 / 3e-170 ATPC2 ATPase, F1 complex, gamma subunit protein (.1) AT2G33040 110 / 2e-27 ATP3 gamma subunit of Mt ATP synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040068 [exp] 484 / 6e-172 AT4G04640 497 / 3e-177 ATPase, F1 complex, gamma subunit protein (.1) Lus10021535 [exp] 483 / 7e-172 AT4G04640 496 / 6e-177 ATPase, F1 complex, gamma subunit protein (.1) Lus10042366 [exp] 107 / 5e-26 AT2G33040 508 / 0.0 gamma subunit of Mt ATP synthase (.1) Lus10012200 [exp] 108 / 2e-25 AT5G13650 1019 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10007534 [exp] 81 / 2e-17 AT2G33040 445 / 3e-159 gamma subunit of Mt ATP synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G014850 [exp] 608 / 0 AT4G04640 557 / 0.0 ATPase, F1 complex, gamma subunit protein (.1) Potri.011G024700 [exp] 538 / 0 AT4G04640 518 / 0.0 ATPase, F1 complex, gamma subunit protein (.1) Potri.011G003800 [exp] 168 / 8e-50 AT4G04640 140 / 2e-39 ATPase, F1 complex, gamma subunit protein (.1) Potri.012G066100 [exp] 107 / 3e-26 AT2G33040 515 / 0.0 gamma subunit of Mt ATP synthase (.1) Potri.015G057700 [exp] 104 / 4e-25 AT2G33040 513 / 0.0 gamma subunit of Mt ATP synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00231 [flax] [poplar] ATP-synt ATP synthase
Representative CDS sequence Show only first row Show all	>Lus10002078 pacid=23153389 polypeptide=Lus10002078 locus=Lus10002078.g ID=Lus10002078.BGIv1.0 annot-version=v1.0 ATGTCCTCCTGCTCCAATCTAACAATGTGGGTGTCCTCAAGACATTCTCTTTCGGACCCTTGCCTCTTCTCATCTATCACCCCTTTCAAAATCTCCATCC CAAAATCATCTACTTCCCGATCCTCCTCCTCCTCTATTCCTTTGATTCAGTGCAGCTCCCTCCGTGAACTCCGAACTCGTATCGAATCCGTCAAGAACAC CCAAAAGATCACTGAAGCCATGAAGCTTGTGGCGGCCGCTAAAGTCAGGAGAGCCCAAGAAGCCGTTGTTAACGGGCGTCCCTTCTCAGAAACCCTGGTG GAAGTTCTGTACAACATCAACGAGCAGCTCCAGGTTGAAGACGTAGATGCCCCTTTGACCAAAGTCCGTCCCGTCAAGAAGGTGGCCCTTGTAGTCATTA CTGGTGACAGAGGACTCTGCGGCGGTTACAACAGCCAGATCATAAAAAAAGCAGAGCTTAGGATCAAGGAATTGAAGTCCCTGGGACTAGAATACACCAT CATCAGCGTTGGTAGAAAGGGAAACACCTATTTCCTTCGGCGTCCCTACATCCCCGTCGATCGTTTCCTTGAAGGCTCCAATCTTCCCACAACCAAAGAA GCCCAGACCATCGCCGACGATGTATTCTCGCTGTTCGTGAGCGAGGAAGTGGACAAAGTTGAGCTTCTCTACACCAAATTCGTGTCTCTGGTGAAGTCGG ACCCCGTAATCCACACTCTTCTTCCCCTTTCTCCCAAGGGAGAGATCTGCGACATAAACGGAGTGTGCGTTGACGCTGCCGAGGACGAGTTCTTCAGGCT TACCACAAAGGAGGGGAAGCTGACGGTGGAGAGAGACGTGGTGAGGACGGCAACTCCAGATTTCTCTCCTATTTTGCAGTTCGAGCAGGATCCTGTTCAG ATACTGGATGCGTTGCTTCCCTTGTACCTCAACAGTCAGATACTCAAGGCTCTTCAGGAATCATTGGCGAGTGAGCTGGCCAACAGGATGAGCGCCATGA GCACCGCGTCGGATAATGCGTCGGACCTCAAGAAGAGTCTCTCCAAAGTTTACAATAGACAGCGTCAAGCCAAGATTACTGGCGAGATTCTCGAAATCGT TGCTGGTGCCGATGCCTTGACATAA
AA sequence Show only first row Show all	>Lus10002078 pacid=23153389 polypeptide=Lus10002078 locus=Lus10002078.g ID=Lus10002078.BGIv1.0 annot-version=v1.0 MSSCSNLTMWVSSRHSLSDPCLFSSITPFKISIPKSSTSRSSSSSIPLIQCSSLRELRTRIESVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLV EVLYNINEQLQVEDVDAPLTKVRPVKKVALVVITGDRGLCGGYNSQIIKKAELRIKELKSLGLEYTIISVGRKGNTYFLRRPYIPVDRFLEGSNLPTTKE AQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDVVRTATPDFSPILQFEQDPVQ ILDALLPLYLNSQILKALQESLASELANRMSAMSTASDNASDLKKSLSKVYNRQRQAKITGEILEIVAGADALT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Lus10002078 [exp]	0	1
AT3G12345			unknown protein		Lus10040344 [exp]	1.4	0.9705
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Lus10012452 [exp]	1.7	0.9762
AT5G08410		FTRA2	ferredoxin/thioredoxin reducta...		Lus10013448 [exp]	2.4	0.9700
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Lus10006188 [exp]	4.5	0.9630
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Lus10020508 [exp]	5.0	0.9609
AT5G52420			unknown protein		Lus10027495 [exp]	5.3	0.9557
AT3G09580			FAD/NAD(P)-binding oxidoreduct...		Lus10027764 [exp]	5.8	0.9382
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10028299 [exp]	6.0	0.9580
AT2G44310			Calcium-binding EF-hand family...		Lus10008649 [exp]	6.6	0.9186
AT5G42070			unknown protein		Lus10023063 [exp]	7.5	0.9529

Compare expression of checked genes

Lus10002078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.