Plant FIBer expression Database

Lus10002081 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003912
[exp]
86 / 2e-20 AT4G14180 68 / 8e-13 putative recombination initiation defect 1 (.1)
Lus10021481
[exp]
0 / 1 AT4G14180 904 / 0.0 putative recombination initiation defect 1 (.1)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10002081 pacid=23153396 polypeptide=Lus10002081 locus=Lus10002081.g ID=Lus10002081.BGIv1.0 annot-version=v1.0
ATGCTATTACTACACCATAAAGCCCAGATCATTAAATTAGAGCGAAATTTCAGGCGGGCAAATTTTGGCCAATATTTCAAACTCCCGCCATCTGATTGTC
TAGCTAATCCTAAATTCACAGATTTAGTACGAAATGATTTAATTTTGTCTCCGCCGTTCGGTTCCAGATCTCCGATCCTCTATTCGCTTCGCACTCCCTC
TTCTTCCTCCATCAACATCGCAGCAGTAGGATTTCTCCCCCATCAACCACCACCAAGTCTCCTACACCCTCACTCAGCTCACGGCGGCGCTGTCGCAGCC
CCGATTCCTCGAAATCCTGCTCACTTTCCACCTCACTTCCTCCTCTCCCCTCTCCTCCATGCTCTCTCCCTCTTCCCCGACCCGTCCATCGCTTCTCTCC
TCTTCCACCTTATCTCCACCCTACCCTCCTCTGTCGCCGCCATAGCTCCTCGCTTCCACGTAGGCCTCGCTGATCTTGTCTCTTCCTCTTCTGCAGGCTG
GACTCCCGTCCACCTCCACATCATCCAAGACATGCAAAACATTGTTATTGAAGTGAAGGATTGGAAGCTCTAA
AA sequence
>Lus10002081 pacid=23153396 polypeptide=Lus10002081 locus=Lus10002081.g ID=Lus10002081.BGIv1.0 annot-version=v1.0
MLLLHHKAQIIKLERNFRRANFGQYFKLPPSDCLANPKFTDLVRNDLILSPPFGSRSPILYSLRTPSSSSINIAAVGFLPHQPPPSLLHPHSAHGGAVAA
PIPRNPAHFPPHFLLSPLLHALSLFPDPSIASLLFHLISTLPSSVAAIAPRFHVGLADLVSSSSAGWTPVHLHIIQDMQNIVIEVKDWKL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G14180 ATPRD1 putative recombination initiat... Lus10002081
[exp]
0 1
AT1G50240 FU FUSED, Protein kinase family p... Lus10039167
[exp]
5.7 0.9416
AT3G51740 IMK2 inflorescence meristem recepto... Lus10022679
[exp]
9.3 0.9376
AT2G21790 ATRNR1, RNR1, C... CRINKLY LEAVES 8, RIBONUCLEOTI... Lus10033526
[exp]
9.9 0.9284
AT1G02730 SOS6, ATCSLD5 SALT OVERLY SENSITIVE 6, CELLU... Lus10025046
[exp]
11.0 0.9328
AT5G62170 unknown protein Lus10031666
[exp]
12.3 0.9036
AT5G62170 unknown protein Lus10027402
[exp]
13.6 0.8967
AT5G27550 P-loop containing nucleoside t... Lus10004487
[exp]
16.6 0.9324
AT1G50240 FU FUSED, Protein kinase family p... Lus10013766
[exp]
16.9 0.9316
AT5G23910 ATP binding microtubule motor ... Lus10039243
[exp]
17.8 0.9311
AT1G68560 AXY3, TRG1, XYL... thermoinhibition resistant ger... Lus10034315
[exp]
19.3 0.8922

Lus10002081 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.