Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08790 225 / 8e-69 NAC ATAF2, ANAC081 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G63790 218 / 2e-65 NAC ANAC102 NAC domain containing protein 102 (.1) AT3G04070 202 / 2e-59 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT1G61110 201 / 3e-59 NAC ANAC025 NAC domain containing protein 25 (.1) AT1G01720 194 / 4e-57 NAC ATAF1, ANAC002 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G69490 193 / 9e-57 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) AT1G77450 191 / 2e-56 NAC ANAC032 NAC domain containing protein 32 (.1) AT3G15510 192 / 2e-55 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) AT3G15500 188 / 1e-54 NAC ATNAC3, ANAC055 NAC domain containing protein 55, NAC domain containing protein 3 (.1) AT1G52890 187 / 7e-54 NAC ANAC019 NAC domain containing protein 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003847 [exp] 525 / 0 AT1G61110 196 / 3e-60 NAC domain containing protein 25 (.1) Lus10020883 [exp] 268 / 1e-84 AT5G08790 320 / 6e-110 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10033493 [exp] 267 / 2e-84 AT5G08790 315 / 4e-108 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10043095 [exp] 209 / 2e-61 AT3G15510 351 / 1e-119 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10032657 [exp] 209 / 2e-61 AT3G15510 353 / 1e-120 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10003269 [exp] 207 / 1e-60 AT3G04070 324 / 3e-109 NAC domain containing protein 47 (.1.2) Lus10027357 [exp] 208 / 4e-60 AT3G04070 172 / 3e-50 NAC domain containing protein 47 (.1.2) Lus10042531 [exp] 205 / 6e-60 AT3G04070 303 / 4e-101 NAC domain containing protein 47 (.1.2) Lus10037156 [exp] 201 / 2e-59 AT1G69490 318 / 2e-109 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G099400 [exp] 228 / 1e-69 AT1G01720 366 / 6e-128 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.005G069500 [exp] 228 / 1e-69 AT1G01720 357 / 3e-124 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.009G052200 [exp] 217 / 3e-63 AT4G27410 188 / 1e-55 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.001G256600 [exp] 216 / 1e-62 AT3G04070 190 / 7e-56 NAC domain containing protein 47 (.1.2) Potri.011G123500 [exp] 206 / 1e-60 AT3G15510 323 / 4e-109 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.013G054000 [exp] 204 / 1e-59 AT3G04070 338 / 9e-115 NAC domain containing protein 47 (.1.2) Potri.001G404400 [exp] 202 / 3e-59 AT3G15510 345 / 1e-117 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.019G031400 [exp] 202 / 4e-59 AT3G04070 332 / 1e-112 NAC domain containing protein 47 (.1.2) Potri.004G038000 [exp] 202 / 4e-59 AT1G61110 332 / 3e-113 NAC domain containing protein 25 (.1) Potri.009G052300 [exp] 201 / 2e-58 AT1G01720 179 / 2e-53 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10002083 pacid=23151640 polypeptide=Lus10002083 locus=Lus10002083.g ID=Lus10002083.BGIv1.0 annot-version=v1.0 ATGGCGATGTACGGGGAGAAAGAGTGGTATTTCTTCTCGCCCAGGGATCGGAAGTACCCGAACGGGTCACGGCCGAACCGGGCAGCGGGTGCAGGGTATT GGAAGGCCACCGGAGTTGATAAGCCGATCGGGAAACCTAAAGTTATGGGGATAAAGAAATCGCTGGTGTTTTACGCGGGCAAGGCTCCGAGAGGGGTCAA GACAAATTGGATCATGCATGAGTACCGTCTCGCCAATGTAGACCGATCTGCTTCCGCTGGCAAGAAATCTGGCCTCCGGTTGGACGATTGGGTGTTATGT CGACTGTACAACAAGAAAGGAAGAATGGAAAAGCATTTTCCGGCGACGGTTAAGCTCCAGCCGTGGTCGCCGTCGGAGGAGGAGATGAAGCCCAATGTAG ACGAGATGGTGCAGAACTTGATGCAGATGGAGAAGCCGGAGTGTTCCTTGATGCCACCGAGCAGCTCCGGGGAGCACGGAGAAGAGTGGTCGCCGCCGGA GGGCCACCCAGATTCGAACGGAGGGAATGGGTTCGGTTTCGATCTCGATATATGGGATTTTGAGGTGGGGTTTGCTAGAGATGAGGCCCGGTTGGCGAGT GAGAATCGAGTTCAGAATGATTTCATTTTTGGTGTTACAATTATCCTACTTGCCCTCTCATACAAGAAAAAGTTATATTCTCAAAGGAAAGTAAGCCCCA TCCGAAATCCTAGCCGCCCTTTGCCCATAACCGCCAGCACAACACCTTTACTCACCTCCAACACCAACAACGGAACCTCCAACATCACCATTCCCATCCT CAACACCAAAGATTCTCCTACCCCACCTCAAGTACTTCCCTACGTACTTCCGCTCTTCAGAGCTTCTCCGGCGGCGATCTGTTCTTTTTCTCCGATGGAG CTTGATGATCAGGAGACTGTCGTGATCAAGAATGAAGGCGGCGCCAATGATGATTATGCTGACCAGGATCATCATCATGAAGTTGTTGATTCTTTACCGC CCGGTTTCAGGTTTTGCCCTAGGGATGACGAGCTGGTTGTTCATTACCTGAAGAAGAAAGCGTCGGGCGAGCCTTTGCCCATGAACAAGATCTTGGAGGT CAACCTGTACAAGTTCGATCCCGACACGGTTTCCGCGACGTGCGAGGGAACTGGTGAAGGCGAGTGGTACTTCTTCACACCAAGAGACAGGAAGTACCCG AACGGAGACCGACCGAACAGGGCAGCAGGAAACGGCTACTGGAAGGCCACCGGCGCCGACAAGAAAATCGTGGTTAAAAACGTCGTAGTGGGGCTGCGGA AGGCGCTTGTTTACTACTACGGGAAGCCTCCGAAGGGCGTGAAGTCTAACTGGATCATGCATGAGTATAAGCTCGCAGATTCCAGAGTTCAAAGTACTCG TACTCAAAGGACGGATAAATCCGACATGCGGCTGGATGATTATATCCTATGCAGGATATATAGGAAGTCCGAGAGGGCGAGAAATTCTCGTTACACCGGC TACGACGAGGAAGCTCATGATCTTCTTGGTCAAGAAGACTCCCCTGCCGCCGCTGCCACCTCTCCCTCCACTTCTTCTCTGATCATCAACCCAACTGGCC AAACGCCGTCGTTTCAACACCATCCTCCTCCTCAACAGCAACTGCCTGCAGCTCTACCATGGCAAGATAACAACGCTCTTGGTGTCCCAAGCAACAATCC CCTTCAGCAGCAGCCGATGACCTACATGAATAACTATGTAAACGAGTATAATGAAGACCTTGGTAGAGACTGGAGCGCCCTTGATTTGGACTGCCTTGCT CGTTGTTTAGATGGCGACAATGAGTACGTTCCACCACTTCCGGTGGATGATGGCATGGATTATGGGATAATTGACCCTAATTCGTTTATCTTATGA
AA sequence Show only first row Show all	>Lus10002083 pacid=23151640 polypeptide=Lus10002083 locus=Lus10002083.g ID=Lus10002083.BGIv1.0 annot-version=v1.0 MAMYGEKEWYFFSPRDRKYPNGSRPNRAAGAGYWKATGVDKPIGKPKVMGIKKSLVFYAGKAPRGVKTNWIMHEYRLANVDRSASAGKKSGLRLDDWVLC RLYNKKGRMEKHFPATVKLQPWSPSEEEMKPNVDEMVQNLMQMEKPECSLMPPSSSGEHGEEWSPPEGHPDSNGGNGFGFDLDIWDFEVGFARDEARLAS ENRVQNDFIFGVTIILLALSYKKKLYSQRKVSPIRNPSRPLPITASTTPLLTSNTNNGTSNITIPILNTKDSPTPPQVLPYVLPLFRASPAAICSFSPME LDDQETVVIKNEGGANDDYADQDHHHEVVDSLPPGFRFCPRDDELVVHYLKKKASGEPLPMNKILEVNLYKFDPDTVSATCEGTGEGEWYFFTPRDRKYP NGDRPNRAAGNGYWKATGADKKIVVKNVVVGLRKALVYYYGKPPKGVKSNWIMHEYKLADSRVQSTRTQRTDKSDMRLDDYILCRIYRKSERARNSRYTG YDEEAHDLLGQEDSPAAAATSPSTSSLIINPTGQTPSFQHHPPPQQQLPAALPWQDNNALGVPSNNPLQQQPMTYMNNYVNEYNEDLGRDWSALDLDCLA RCLDGDNEYVPPLPVDDGMDYGIIDPNSFIL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08790	NAC	ATAF2, ANAC081	Arabidopsis NAC domain contain...		Lus10002083 [exp]	0	1
AT5G08790	NAC	ATAF2, ANAC081	Arabidopsis NAC domain contain...		Lus10033493 [exp]	6.6	0.7908
AT2G46150			Late embryogenesis abundant (L...		Lus10027178 [exp]	18.7	0.7292
AT5G08790	NAC	ATAF2, ANAC081	Arabidopsis NAC domain contain...		Lus10003848 [exp]	21.2	0.7107
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10001643 [exp]	24.1	0.7577
AT3G04200			RmlC-like cupins superfamily p...		Lus10006549 [exp]	27.3	0.7538
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10007344 [exp]	27.9	0.7731
AT1G76520			Auxin efflux carrier family pr...		Lus10025166 [exp]	29.4	0.6787
AT5G38960			RmlC-like cupins superfamily p...		Lus10006550 [exp]	32.1	0.7530
AT4G18010		AT5PTASE2, IP5P...	INOSITOL\(1,4,5\)P3 5-PHOSPHAT...		Lus10003010 [exp]	32.6	0.7380
AT2G30150			UDP-Glycosyltransferase superf...		Lus10042262 [exp]	35.6	0.7640

Compare expression of checked genes

Lus10002083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.