Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64040 178 / 6e-58 PSAN, PSI-N photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) (.1), photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003849 [exp] 224 / 5e-76 AT5G64040 207 / 2e-69 photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) (.1), photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G063300 [exp] 175 / 1e-56 AT5G64040 224 / 5e-76 photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) (.1), photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) (.2) Potri.007G105900 [exp] 173 / 6e-56 AT5G64040 231 / 1e-78 photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) (.1), photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05479 [flax] [poplar] PsaN Photosystem I reaction centre subunit N (PSAN or PSI-N)
Representative CDS sequence Show only first row Show all	>Lus10002084 pacid=23151635 polypeptide=Lus10002084 locus=Lus10002084.g ID=Lus10002084.BGIv1.0 annot-version=v1.0 ATGGCAGCCACCAGCATGATGATGAGCTCCTCTTCCAGTGTCCTTGCCTGCAAGTACACAACCAAATCTTCATCGTCAACCACTAGGAAGTTCCCAGTGA TCAGAGCTCAGCAAGGAGACCGTGAAGCTGGAAATGGGAAGAAGGCTGCAGTGGCTTTCCTTGCAGCTACTCTGTTTGCCACCGCAACTGTTTCTACTTC CTTCTCTGCCAACGCTGGTGTCATCGATGACTACCTTGAGAAGAGCAAAATCAACAAGGAGTTGAATGACCAGAAGAGGCTAGCAACAAGTGGAGCCAAC TTTGCAAGAGCTTACACTGTCCAGTTTGGCTCCTGCAAGTTCCCTGAGAACTTCACTGGATGCCAGGATCTTGCCAAGCAGAAGAAAGTGCCATTCATCT CTGAGGATTTGGAGTTGGAGTGCAAAGGAAAAGACAAGTACAAGTGTGGCTCTAATGTTTTCTGGAAATGGTGA
AA sequence Show only first row Show all	>Lus10002084 pacid=23151635 polypeptide=Lus10002084 locus=Lus10002084.g ID=Lus10002084.BGIv1.0 annot-version=v1.0 MAATSMMMSSSSSVLACKYTTKSSSSTTRKFPVIRAQQGDREAGNGKKAAVAFLAATLFATATVSTSFSANAGVIDDYLEKSKINKELNDQKRLATSGAN FARAYTVQFGSCKFPENFTGCQDLAKQKKVPFISEDLELECKGKDKYKCGSNVFWKW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64040		PSAN, PSI-N	photosystem I reaction center ...		Lus10002084 [exp]	0	1
AT1G52230		PSAH2, PSAH-2, ...	PHOTOSYSTEM I SUBUNIT H-2, pho...		Lus10025798 [exp]	1.7	0.9928
AT1G52230		PSAH2, PSAH-2, ...	PHOTOSYSTEM I SUBUNIT H-2, pho...		Lus10035864 [exp]	2.4	0.9885
AT1G30380		PSAK	photosystem I subunit K (.1)		Lus10007399 [exp]	2.4	0.9892
AT5G64040		PSAN, PSI-N	photosystem I reaction center ...		Lus10003849 [exp]	2.6	0.9793
AT2G42220			Rhodanese/Cell cycle control p...		Lus10021032 [exp]	3.5	0.9806
AT2G20260		PSAE-2	photosystem I subunit E-2 (.1)		Lus10011913 [exp]	4.0	0.9881
AT1G30380		PSAK	photosystem I subunit K (.1)		Lus10012086 [exp]	4.5	0.9881
AT2G42220			Rhodanese/Cell cycle control p...		Lus10023820 [exp]	4.9	0.9774
AT1G08380		PSAO	photosystem I subunit O (.1)		Lus10013310 [exp]	7.1	0.9625
AT1G18170			FKBP-like peptidyl-prolyl cis-...		Lus10038954 [exp]	7.3	0.9769

Compare expression of checked genes

Lus10002084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.