Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16550 103 / 3e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003850 [exp] 271 / 9e-92 AT5G16550 224 / 9e-74 unknown protein Lus10033497 [exp] 154 / 3e-46 AT5G16550 204 / 2e-66 unknown protein Lus10020879 [exp] 66 / 1e-11 AT5G64580 994 / 0.0 EMBRYO DEFECTIVE 3144, AAA-type ATPase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G082300 [exp] 138 / 5e-40 AT5G16550 185 / 1e-58 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002085 pacid=23151633 polypeptide=Lus10002085 locus=Lus10002085.g ID=Lus10002085.BGIv1.0 annot-version=v1.0 ATGGATGAATCGGAGGAAACCTCCGTCATCAACGGCACCCACGCCGACGAGAAGCCTAGCTCCCACCGGAAAAGAACCATCGAAGACGAAAACGACGAAG ACTTGACTCTCTACGCCGTCTTGCATCGCATTCTGACCACGATCTTCGCTCCCGCCTCCTCGGGTGGGGCATCCGCTCCGCTGCTGCAGCGGATCAAGGC TTCTTTCTCCGACAACGGACCGTTGCTCAAGGATGCTACCGAGAACACTGGACGGGAGGTTCTTGCCTGGACAAGGAACGGCAGTCCTCTCCGCGCTCTG CTCGTCATCTCCGATCTGGTTAATAATGAGTTGAATCATCACCAGAGCATGATTGCAGCCATGAGTAGATCAAAGATGGAACTCAATTATTATAGCAAGA TTAGGCTGTTGATGCCAGATTTTCTGCTAATGCAGGTCGGGACTGTGGCTCTTCTTGCCATGACAGGAACATTAGTGTTCATGCTTTTCTTCGTGGCAGC CACCATCAACGCTATTGTCATCTCCCTTCTCGTGTCACTGGCTGCTGCTGGTGGCTTCCTGGCTCTTTTCTTCGCCTGCCTTGCTACCATATACATCGGG GCACTATCTGCTGCGATATTCGCCATTTCAACAGCAACAATCTCGACAATTATCGCTGTTGTCGTGGCTGCAGGTTGGATCGGATTCTTCTGGACCATAT GGTTGGTAACAAGGAAGAGTGCCGGTCTCGCAATACATTCGCTGAGTGTGACCGAATCAGCCATTTCGTCGTACTCGTCAGCCTGGCATAGTCGCCAACG AGTACCGGAGAAAGAAGAATGA
AA sequence Show only first row Show all	>Lus10002085 pacid=23151633 polypeptide=Lus10002085 locus=Lus10002085.g ID=Lus10002085.BGIv1.0 annot-version=v1.0 MDESEETSVINGTHADEKPSSHRKRTIEDENDEDLTLYAVLHRILTTIFAPASSGGASAPLLQRIKASFSDNGPLLKDATENTGREVLAWTRNGSPLRAL LVISDLVNNELNHHQSMIAAMSRSKMELNYYSKIRLLMPDFLLMQVGTVALLAMTGTLVFMLFFVAATINAIVISLLVSLAAAGGFLALFFACLATIYIG ALSAAIFAISTATISTIIAVVVAAGWIGFFWTIWLVTRKSAGLAIHSLSVTESAISSYSSAWHSRQRVPEKEE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16550			unknown protein		Lus10002085 [exp]	0	1
AT1G08290	C2H2ZnF	WIP3	WIP domain protein 3 (.1)		Lus10020597 [exp]	1.4	0.9078
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10016599 [exp]	2.0	0.9235
AT3G06483		ATPDHK, PDK	pyruvate dehydrogenase kinase ...		Lus10017117 [exp]	3.5	0.8983
AT1G55790			Domain of unknown function (DU...		Lus10002759 [exp]	5.9	0.8929
AT1G55790			Domain of unknown function (DU...		Lus10000235 [exp]	6.3	0.8869
AT2G01620		MEE11	maternal effect embryo arrest ...		Lus10007930 [exp]	6.5	0.8883
AT5G53730			Late embryogenesis abundant (L...		Lus10032932 [exp]	6.9	0.8944
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10036402 [exp]	7.7	0.8916
AT2G01620		MEE11	maternal effect embryo arrest ...		Lus10013466 [exp]	11.6	0.8807
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10038218 [exp]	11.7	0.8345

Compare expression of checked genes

Lus10002085 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.