Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33480 270 / 5e-88 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003851 [exp] 578 / 0 AT4G33480 293 / 2e-97 unknown protein Lus10020876 [exp] 257 / 1e-82 AT4G33480 308 / 6e-104 unknown protein Lus10033501 [exp] 252 / 8e-81 AT4G33480 308 / 5e-104 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G099900 [exp] 289 / 3e-95 AT4G33480 340 / 3e-116 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12527 [flax] [poplar] DUF3727 Protein of unknown function (DUF3727)
Representative CDS sequence Show only first row Show all	>Lus10002086 pacid=23151642 polypeptide=Lus10002086 locus=Lus10002086.g ID=Lus10002086.BGIv1.0 annot-version=v1.0 ATGGCGGTTTCTTCGTCAATCTCCTTCTCCACCGTAATCCACCGACTATTCCATCACCACCACAACAAAAGCAACTTTCTTCTCTCATTTCCCGCCTCCA AATTCTCCATCCCCAACCCACCTTGCCTCTCCATTACCAGAGCTTCCTCCTCATCCTCATCCTCATCCTCATCCTCATCGTCTTCCTCGAAGAAGAAGAA AAAAAACAAGACGCCTACCACGAAGAAAAGGAATAATAGCAAGAAAGGTAAGGCAGGTGACGACTGGAAGGATCTCAGCTCGCTTAGTGATTTTGAAATC GTTGATAAAGCTTCAAAAAATGTAAAAAAAAATGATGATGGTTATGACGAAGTCAGCCTCCGTCGTTCCTCAACTTACCTTCCTCCATCGACGACTGCTC CATTGCCGAAGCCTCCCGCCGGCTTTGCCGTATCCGAATCGGGAAGAATCTCCGTCACTTCCGTCAGCCGGATTGCCACAATTGTTGATGCTACGAATAA CAGTCCGTTGGACTGCGTAGTGAGGAGAGTGTTTAAGAGTTCAAGAGGGGATGAATGTATGCTCTTGTGCCCTGTCGATATGCCTGTTCACTTACTAAAG AGTATGAATATCGATGGGTGGTCAGCGATCAGTGATGAAGAACTTGAGGCTATCCTTCCTGACGCAGCATTTGCTTTGTCGAAGATAGACATGCATCTTG TCCTTAGCGGATTCTGTCTCACAGCAAGAGGCGCATTCTGTTACCAGGATGACGACATATTCGATTTCCGCACAGGCAAGGACCCTTCTCACCTTCTCCT AGTGAGAAACATAGCAGATCAGGACTTCAAGACGAAACATTCTACTGATGAAGCTTTTACTAATGTTGCAGGCGATGGCGAAAATACAGATGGAGTACCC TGTGAGGGTGTTGAAGTCACAGACTTCCATATTGATGGTACACATTACATGATGTATACCCCATCAGATCCACTTCTTTTCATTGCCATTCGGGATAAGG ATGGAGTGTTGCAAATAGCCGACGATGATCTACTGGAGGACCCAGCCGTGATCACTGCCATCGACGAGGAGACTGAATTCGATGCATATGCACTGGTGGA GTTGGGATGGCTGGCTAGCACTTTGGTTGTTCTCCATTGGTTTCCTCGAAAACTTGGGAGGATTCCAAGTAAAGTTAGCGAGATATCCAATGAAACGGTG TCGTTTACTTTCTAG
AA sequence Show only first row Show all	>Lus10002086 pacid=23151642 polypeptide=Lus10002086 locus=Lus10002086.g ID=Lus10002086.BGIv1.0 annot-version=v1.0 MAVSSSISFSTVIHRLFHHHHNKSNFLLSFPASKFSIPNPPCLSITRASSSSSSSSSSSSSSSKKKKKNKTPTTKKRNNSKKGKAGDDWKDLSSLSDFEI VDKASKNVKKNDDGYDEVSLRRSSTYLPPSTTAPLPKPPAGFAVSESGRISVTSVSRIATIVDATNNSPLDCVVRRVFKSSRGDECMLLCPVDMPVHLLK SMNIDGWSAISDEELEAILPDAAFALSKIDMHLVLSGFCLTARGAFCYQDDDIFDFRTGKDPSHLLLVRNIADQDFKTKHSTDEAFTNVAGDGENTDGVP CEGVEVTDFHIDGTHYMMYTPSDPLLFIAIRDKDGVLQIADDDLLEDPAVITAIDEETEFDAYALVELGWLASTLVVLHWFPRKLGRIPSKVSEISNETV SFTF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33480			unknown protein		Lus10002086 [exp]	0	1
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Lus10031669 [exp]	9.4	0.7486
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Lus10027506 [exp]	10.4	0.7465
AT2G45150		CDS4	cytidinediphosphate diacylglyc...		Lus10009281 [exp]	12.4	0.7104
AT4G33480			unknown protein		Lus10003851 [exp]	17.4	0.7178
AT2G39670			Radical SAM superfamily protei...		Lus10002698 [exp]	17.7	0.7235
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Lus10010979 [exp]	26.6	0.7271
AT4G37920			unknown protein		Lus10029560 [exp]	27.9	0.7100
AT5G24650			Mitochondrial import inner mem...		Lus10015593 [exp]	29.9	0.7080
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10036176 [exp]	42.4	0.6985
AT3G02900			unknown protein		Lus10009524 [exp]	55.1	0.6609

Compare expression of checked genes

Lus10002086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.