Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003852 [exp] 107 / 4e-31 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002087 pacid=23151630 polypeptide=Lus10002087 locus=Lus10002087.g ID=Lus10002087.BGIv1.0 annot-version=v1.0 ATGGGGGGTTGCGCCACCAAGCCAAAGGTCGCCAAAGACCAGAATCTCCCTGCGCCGGCGCCTGAGAAGGGAGATGAGCTAGCCACGTCCACCGCCGTGG ATATGACGGCAGTGGAGGAGAAGGAGGTTGTGGTCGTCGGAGGTGAAGAAGGAGAGAAGAAGAAAGGTGACGGTGAGACCCTCAGTCAACAGCTGTTGAA GGAGAGCACGGAAGAAGAAACAGAGACCATCGTAGAAGACGGTAACAAGTCGTCGTTGCCGGAAGCAGCGGTGGAAGTGACGACGACGGAGGCCGGGAAA GGTGAGGCTCCGGAGGCGGCAGTGGCTGAAGTGGTGAAGGAGGCCGTTGTTGTAAGTTGA
AA sequence Show only first row Show all	>Lus10002087 pacid=23151630 polypeptide=Lus10002087 locus=Lus10002087.g ID=Lus10002087.BGIv1.0 annot-version=v1.0 MGGCATKPKVAKDQNLPAPAPEKGDELATSTAVDMTAVEEKEVVVVGGEEGEKKKGDGETLSQQLLKESTEEETETIVEDGNKSSLPEAAVEVTTTEAGK GEAPEAAVAEVVKEAVVVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10002087 [exp]	0	1
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010045 [exp]	1.0	0.9770
AT4G22990			Major Facilitator Superfamily ...		Lus10015852 [exp]	2.6	0.9373
AT3G56230			BTB/POZ domain-containing prot...		Lus10010216 [exp]	3.0	0.9532
					Lus10003852 [exp]	3.2	0.9330
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025068 [exp]	3.2	0.9599
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Lus10029838 [exp]	3.5	0.9314
AT4G13620	AP2_ERF		Integrase-type DNA-binding sup...		Lus10016669 [exp]	5.5	0.9088
AT3G55230			Disease resistance-responsive ...		Lus10003301 [exp]	5.7	0.9443
AT5G61830			NAD(P)-binding Rossmann-fold s...		Lus10001968 [exp]	6.5	0.9377
AT2G30210		LAC3	laccase 3 (.1)		Lus10026401 [exp]	6.5	0.9284

Compare expression of checked genes

Lus10002087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.