Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09850 220 / 5e-69 Transcription elongation factor (TFIIS) family protein (.1) AT3G10820 75 / 1e-14 Transcription elongation factor (TFIIS) family protein (.1), Transcription elongation factor (TFIIS) family protein (.2) AT5G05140 64 / 5e-11 Transcription elongation factor (TFIIS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003853 [exp] 537 / 0 AT5G09850 268 / 4e-88 Transcription elongation factor (TFIIS) family protein (.1) Lus10027295 [exp] 70 / 6e-13 AT5G05140 369 / 1e-124 Transcription elongation factor (TFIIS) family protein (.1) Lus10039000 [exp] 52 / 5e-07 AT5G05140 382 / 2e-129 Transcription elongation factor (TFIIS) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G003900 [exp] 271 / 1e-88 AT5G09850 322 / 7e-109 Transcription elongation factor (TFIIS) family protein (.1) Potri.001G307600 [exp] 265 / 2e-86 AT5G09850 336 / 4e-114 Transcription elongation factor (TFIIS) family protein (.1) Potri.006G035500 [exp] 53 / 2e-07 AT5G05140 309 / 6e-101 Transcription elongation factor (TFIIS) family protein (.1) Potri.016G033300 [exp] 52 / 3e-07 AT5G05140 415 / 3e-142 Transcription elongation factor (TFIIS) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08711 [flax] [poplar] Med26 TFIIS helical bundle-like domain
Representative CDS sequence Show only first row Show all	>Lus10002088 pacid=23151638 polypeptide=Lus10002088 locus=Lus10002088.g ID=Lus10002088.BGIv1.0 annot-version=v1.0 ATGGATTCGGACGATCTCCGATCGATCCTGGAAACGGCGGGAGTGGACGTTTGGGAGCTGATAGACTCGGCCATCGCCGTTGCGTCGTCGGATTACCCGT CGGAGCTGAAGCAACGGAGGGATAAAATCGTGGAAGCGTTGTTCTCCTCCGCCGCCTCCGCCACGTGTAACAGATGTGCTCAGAGTGGTGGCGGGAATGG ACGGGAGATGGAAGTGGACACAAATACTTCTCCGGCCGCAGTCGCCGCCATCGTCGAGAGAGAAGCAATTCGACACCGTTCTCCTGTAACGCCGGTTGAT GATGAGTTTGAAGAAGAAGATCCGTACGCTGGATTGTTCGAAGATGATATAGAGACTAGAGTTATGGATATTAAACAGCAGCTGGAAGATCCTGATCAGT CTGAAGATTCTCTGGTTGAGTTGCTGCAAACTCTGGATGACATGGATATAACATTCAAGGCTCTAAAGGAGAGTGACATTGGAAGGCATGTGAACAGGTT GAGGAAGAATCCATCAAATGAAGTCAAGAGATTAGTGAAGAAGCTAGTCAGGAAATGGAAGGAGATTGTTGATGAATGGGTGAGGTTGAATCCACAGGGA GGAGAACATGGTTCCTCAGCTCTGATGGCTGATGGGGACTCACCTCAGCAACAAAGGATTACCCAGAATGGAAACTATCATCACCAGGTGCCTGATTTTG CATACTCTCCAAATCCCAACAATGGCAGTTCTGGATCAGACAGAAATTATTCTGAACCGGAAGTAGTTGTACGAAAGCCAAAGCCTCCAGTCTCCGGCGC CGTAAGAAGAGAAGCTCCAACAAGACCAGCTCAACAATACTCATCATCATCGACTGCTCCTCCCAATAGGTCACAGCAACAAAAAGGGAGCAATGGCAAC TTCAACTCAGATAGGCTGGCCTCAGCAAGCAAAAGGCTTCAAGAGAGCTACAAAGAAGTTGAAAATGCAAAGGCAATGAAAGTGAGTCCGGTATCCGAAG CTCGGGATGGTGTGCTTCGGGTTCCAGTCGAAAGTGACCAATTTGCAATGTGA
AA sequence Show only first row Show all	>Lus10002088 pacid=23151638 polypeptide=Lus10002088 locus=Lus10002088.g ID=Lus10002088.BGIv1.0 annot-version=v1.0 MDSDDLRSILETAGVDVWELIDSAIAVASSDYPSELKQRRDKIVEALFSSAASATCNRCAQSGGGNGREMEVDTNTSPAAVAAIVEREAIRHRSPVTPVD DEFEEEDPYAGLFEDDIETRVMDIKQQLEDPDQSEDSLVELLQTLDDMDITFKALKESDIGRHVNRLRKNPSNEVKRLVKKLVRKWKEIVDEWVRLNPQG GEHGSSALMADGDSPQQQRITQNGNYHHQVPDFAYSPNPNNGSSGSDRNYSEPEVVVRKPKPPVSGAVRREAPTRPAQQYSSSSTAPPNRSQQQKGSNGN FNSDRLASASKRLQESYKEVENAKAMKVSPVSEARDGVLRVPVESDQFAM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09850			Transcription elongation facto...		Lus10002088 [exp]	0	1
AT5G09850			Transcription elongation facto...		Lus10003853 [exp]	1.0	0.9878
AT2G20120		COV1	CONTINUOUS VASCULAR RING, Prot...		Lus10011099 [exp]	1.4	0.9639
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10028342 [exp]	3.5	0.9332
AT5G50530			CBS / octicosapeptide/Phox/Bem...		Lus10043123 [exp]	3.5	0.9400
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10014827 [exp]	3.9	0.9500
AT1G15740			Leucine-rich repeat family pro...		Lus10038107 [exp]	5.7	0.9478
AT1G60995			unknown protein		Lus10014638 [exp]	6.8	0.9241
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10032471 [exp]	7.0	0.9398
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Lus10030991 [exp]	7.3	0.9360
AT4G35310		CPK5, ATCPK5	calmodulin-domain protein kina...		Lus10001384 [exp]	8.1	0.9049

Compare expression of checked genes

Lus10002088 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.