Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64730 499 / 3e-180 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 133 / 1e-36 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 130 / 2e-35 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G50230 119 / 4e-30 Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 105 / 7e-26 Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 101 / 5e-24 PRL1 pleiotropic regulatory locus 1 (.1) AT3G16650 100 / 1e-23 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08560 89 / 2e-19 transducin family protein / WD-40 repeat family protein (.1.2) AT5G43920 87 / 4e-19 transducin family protein / WD-40 repeat family protein (.1) AT1G10580 87 / 5e-19 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003855 [exp] 582 / 0 AT5G64730 524 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 137 / 4e-38 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 132 / 2e-36 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 126 / 7e-34 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 125 / 2e-33 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10042076 [exp] 102 / 5e-24 AT5G50230 767 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10012230 [exp] 100 / 5e-24 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018081 [exp] 100 / 2e-23 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 98 / 3e-23 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G306500 [exp] 545 / 0 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 145 / 2e-41 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 132 / 3e-36 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 126 / 3e-34 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 107 / 1e-26 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G087200 [exp] 107 / 4e-26 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G012800 [exp] 96 / 4e-22 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.005G206600 [exp] 88 / 3e-19 AT5G08560 736 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G055800 [exp] 87 / 6e-19 AT5G08560 716 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.010G064600 [exp] 83 / 1e-17 AT1G10580 906 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10002090 pacid=23151634 polypeptide=Lus10002090 locus=Lus10002090.g ID=Lus10002090.BGIv1.0 annot-version=v1.0 ATGAGCGTCTCCGATTTGCCGACGAAGGAGGCCAACGTGCTGAAAGGCCACGAAGGAGCCGTACTAGCCGCGAGGTTCAACGCCGATGGAAACTACTGCC TCAGCTGCGGTAAGGACCGTACGATCCGTCTCTGGAATCCCCACCGCGGCATCCACATCAAGACCTACAAGTCCCACGGCCGTGAAGTCCGCGACGTCCA CGTCACCTCGGACAATTCCAAGTTGGTGTCTTGCGGCGGGGATCGGCAGGTGTTCTATTGGGATGTTTCCACTGGACGAGTGATCAGGAAGTTCCGTGGA CACGATAGCGAGGTGAATGCTGTGAAGTTCAATGAGTATTCATCTGTGGCGGTATCAGCTGGCTATGATCAATCCGTGCGTACTTGGGATTGCCGGTCTC ACAGTACAGAGCCTATCCAGATCATTGATACGTTTACAGATAGTGTGATGTCTGTTTGTTTGACGAAAACGCAGATCATTGCTGGGAGTGTAGATGGTAC AGTTAGGACATTTGACATTCGTGTTGGTAGAGAAATCTCCGACAATTTGGGGCAACCTGTTAACTGTATATCTATGTCGAACGACGGCAACTGCGTCTTA GCTAGTTGTTTGGATTCCACCTTACGCCTTCTGGACAGAACCACTGGTGAGCTGTTGCAAGAATATAAAGGGCATACTTGCAGGTCTTTCAAAATGGACT GCTGCCTTACAAATTCAGATGCCCACATTACTGGTGGATCTGAGGACGGGTATATCTACTTCTGGGATCTTGTTGATGCGTCTGTGGTTTCGAGATTCAG AGCTCATGCATCAGTGGTCACGAGTGTGAGTTACCATCCAAAGGACAACTGCATGGTGACTGCATCTGTGGACAGCACCATTAGGGTTTGGAAGACCTAA
AA sequence Show only first row Show all	>Lus10002090 pacid=23151634 polypeptide=Lus10002090 locus=Lus10002090.g ID=Lus10002090.BGIv1.0 annot-version=v1.0 MSVSDLPTKEANVLKGHEGAVLAARFNADGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTSDNSKLVSCGGDRQVFYWDVSTGRVIRKFRG HDSEVNAVKFNEYSSVAVSAGYDQSVRTWDCRSHSTEPIQIIDTFTDSVMSVCLTKTQIIAGSVDGTVRTFDIRVGREISDNLGQPVNCISMSNDGNCVL ASCLDSTLRLLDRTTGELLQEYKGHTCRSFKMDCCLTNSDAHITGGSEDGYIYFWDLVDASVVSRFRAHASVVTSVSYHPKDNCMVTASVDSTIRVWKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64730			Transducin/WD40 repeat-like su...		Lus10002090 [exp]	0	1
AT1G76710		ASHH1 ,SDG26	ASH1-RELATED PROTEIN 1, ASH1 R...		Lus10016600 [exp]	3.9	0.9227
AT2G29200		APUM1	pumilio 1 (.1)		Lus10000516 [exp]	7.7	0.9049
AT1G77280			Protein kinase protein with ad...		Lus10039518 [exp]	8.9	0.9114
AT1G63855			Putative methyltransferase fam...		Lus10028415 [exp]	9.9	0.8907
AT2G32070			Polynucleotidyl transferase, r...		Lus10017123 [exp]	15.4	0.9063
AT4G17020			transcription factor-related (...		Lus10012849 [exp]	17.0	0.8977
AT5G55700		BAM4, BMY6	BETA-AMYLASE 6, beta-amylase 4...		Lus10016615 [exp]	19.0	0.8771
AT3G05210		UVR7, ERCC1	UV REPAIR DEFICIENT 7, nucleot...		Lus10004462 [exp]	19.7	0.8726
AT2G31870		PARG1, TEJ	Sanskrit for 'bright', poly\(A...		Lus10020902 [exp]	22.0	0.9014
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Lus10027446 [exp]	27.3	0.8943

Compare expression of checked genes

Lus10002090 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.