Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02750 271 / 5e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09410 242 / 9e-72 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G35030 240 / 1e-71 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62260 234 / 2e-69 MEF9 mitochondrial editing factor 9 (.1) AT1G56690 224 / 5e-65 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G53600 212 / 2e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G25360 189 / 6e-52 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G16835 184 / 7e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22690 176 / 3e-47 unknown protein AT2G13600 175 / 3e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003857 [exp] 950 / 0 AT4G02750 404 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013540 [exp] 254 / 2e-75 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012514 [exp] 248 / 7e-75 AT1G62260 689 / 0.0 mitochondrial editing factor 9 (.1) Lus10013149 [exp] 229 / 5e-67 AT1G56690 946 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030549 [exp] 230 / 7e-67 AT4G02750 468 / 2e-154 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012897 [exp] 219 / 1e-63 AT4G02750 469 / 4e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 212 / 4e-60 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10010998 [exp] 191 / 9e-53 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030908 [exp] 189 / 3e-51 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G048800 [exp] 278 / 1e-84 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G019900 [exp] 251 / 9e-75 AT4G02750 542 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G038400 [exp] 242 / 2e-72 AT2G35030 701 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G006400 [exp] 243 / 3e-72 AT1G56690 993 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G139200 [exp] 234 / 3e-69 AT1G62260 749 / 0.0 mitochondrial editing factor 9 (.1) Potri.013G005400 [exp] 232 / 4e-68 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 200 / 5e-56 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G075200 [exp] 198 / 9e-56 AT1G77010 835 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G081700 [exp] 192 / 2e-53 AT4G16835 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G087300 [exp] 191 / 6e-53 AT1G32415 851 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10002092 pacid=23151641 polypeptide=Lus10002092 locus=Lus10002092.g ID=Lus10002092.BGIv1.0 annot-version=v1.0 ATGGGAAGCTGTTTCTTGGAAGATCAACACCAGCTCACGCTATCTATCAATTCGAGCACTTTCCACGCAACGCCAGCACTCTTCAGCTCTCCCTTACCTC AAGCCTCTCAACTCCAAGCTCTCAAGTTTAATGAAAGTTGGGCTGGTCGAGGATGCCCAGAACCTGTTCGACGAAATGCCAAGCAGAAATGTCGTACTTG GAACACTATGATCAACGGCTATTTCAAGAATGGCAAGTCAGACAAGGCATTTGCACTGTTGGGTTTGATGCCTAAACCCGATATCTACACTTACAACACT GTGATCTCAGGGTTGGCGCAGTGTGGCGATCTGCTTGGTGCCAGGAAGGTGTTTGAAGAGATGGAGGTCCGAGATTCGGTTAGCTGGAACTCCATCATCA CTGGTTATGTTCGTGATGGGACGGTTGGTGAAGCGTTGGAACTGTTTCGTGAAATGCCTGTGGAGATGAGAAATGTAGCTACTTTGAACTTGATCATTAG TGGGCTGGTGAATGGTCAACAAATCGAGTTAGCTATGGAATGTTTTTGCCAAATGGAAGTCAAGGACACAGTGTCTTGGATTATTATGGTGTCTGAATTG GCGAAAGAGGGTCGACTTGCTGAAGCTCATGAGTTGTATGACCAGATGATTCAAAAGCATCCCCATGCTTGCAATTCACTGATCGCTGGATACATTCGAG TCGGGAAATTCAACATGGCTGAAAACTTGTTTCTTGTTGCAGAACAAAAGGATTCTGATTCGTGGAGGCTAATGATAAATGGACTCGTCACTTGTGGAAG ACTCAGTGAAGCAGTTAGACTCTACGTTAAAGCACCCGAGAAGTGTCACACTACGTGGAATGCTCTACTGCTAAGACTAGTAGAGAACGGATCAGCTAGA ACAGCTCATGTCCTCCTCGAAAAGCTTCCATATGGCGACATTGTGTCGTGGACGAAAATAATAGTCGGATATTTCAGGTCCGGCGAAGTCGGACATGCCC TTAAAGTTTTTGATTCAATGCCTAGCCTAGATGTGACTCTATGGAATGTGATGATATGCAGACTAGGAGAAAACGGTCACGGCGAGGAAGGAATTAGATT GTTCATGAGAATGAAACAGTTAGGGTCATCATCACCTGATAAGTCAACGTTCACCAGCGTTTTGATAATCTGTTCCAACTTACCAGCCTTATGCCTTGGG GAACAAGTTTGTGGACACATCATCAAGACCAGGTTCAGTCAAGCAGTCGAGGCGCTGGAGATGTTCGAAGAAATGAGATCAAGTGACGTCGTGAAACCAA ACCAGTTGACTTTTATCGGTGTTATGTCGGCGTGTAGCCATACAGGATTGGTTGAGCAAGGACGATTTGGACTGATTGATGAGGCCACGAGTTTCATCGA TGAAATGAGAGAAGTTCCGGTTAGTGTTTGGGGAGCTTTACTCGGAGCCTGTAGAGTCCACAGAAATTTTGAGGTTGGTGTGATTGCTGCTGAGAATGTT TTGGCATTGGAACCTGATAGATCGGGGGCATATTTGATTTTGGCGGAAATGTATGCGGAGTGTTGGGAGAAGGGACGAGGCTGA
AA sequence Show only first row Show all	>Lus10002092 pacid=23151641 polypeptide=Lus10002092 locus=Lus10002092.g ID=Lus10002092.BGIv1.0 annot-version=v1.0 MGSCFLEDQHQLTLSINSSTFHATPALFSSPLPQASQLQALKFNESWAGRGCPEPVRRNAKQKCRTWNTMINGYFKNGKSDKAFALLGLMPKPDIYTYNT VISGLAQCGDLLGARKVFEEMEVRDSVSWNSIITGYVRDGTVGEALELFREMPVEMRNVATLNLIISGLVNGQQIELAMECFCQMEVKDTVSWIIMVSEL AKEGRLAEAHELYDQMIQKHPHACNSLIAGYIRVGKFNMAENLFLVAEQKDSDSWRLMINGLVTCGRLSEAVRLYVKAPEKCHTTWNALLLRLVENGSAR TAHVLLEKLPYGDIVSWTKIIVGYFRSGEVGHALKVFDSMPSLDVTLWNVMICRLGENGHGEEGIRLFMRMKQLGSSSPDKSTFTSVLIICSNLPALCLG EQVCGHIIKTRFSQAVEALEMFEEMRSSDVVKPNQLTFIGVMSACSHTGLVEQGRFGLIDEATSFIDEMREVPVSVWGALLGACRVHRNFEVGVIAAENV LALEPDRSGAYLILAEMYAECWEKGRG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10002092 [exp]	0	1
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Lus10013341 [exp]	3.7	0.8547
AT2G37320			Tetratricopeptide repeat (TPR)...		Lus10009070 [exp]	5.5	0.8338
AT5G02930			F-box/RNI-like superfamily pro...		Lus10029587 [exp]	6.3	0.7952
AT3G46870			Pentatricopeptide repeat (PPR)...		Lus10016476 [exp]	6.6	0.8109
AT1G03540			Pentatricopeptide repeat (PPR-...		Lus10033713 [exp]	6.7	0.8148
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10036384 [exp]	7.7	0.8066
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10018492 [exp]	8.0	0.7998
AT1G62260		MEF9	mitochondrial editing factor 9...		Lus10012514 [exp]	10.2	0.8053
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10021069 [exp]	11.6	0.8097
					Lus10029579 [exp]	17.2	0.7954

Compare expression of checked genes

Lus10002092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.