Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33460 272 / 3e-92 ABCI10, ATNAP13, EMB2751 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1) AT1G65410 64 / 9e-12 ABCI13, TGD3, ATNAP11 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) AT1G27940 59 / 1e-09 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT5G09930 58 / 1e-09 ABCF2, ATGCN2 ATP-binding cassette F2, ABC transporter family protein (.1) AT2G36910 57 / 3e-09 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT3G47760 57 / 5e-09 ATATH4, ABCA5 A. THALIANA ABC2 HOMOLOG 4, ATP-binding cassette A5, ABC2 homolog 4 (.1) AT2G13610 56 / 5e-09 ABCG5 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) AT3G62150 56 / 9e-09 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT2G41700 55 / 2e-08 AtABCA1, ABCA1 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) AT4G01830 55 / 2e-08 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000827 [exp] 436 / 8e-157 AT4G33460 362 / 5e-127 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1) Lus10020188 [exp] 62 / 4e-11 AT1G65410 500 / 2e-179 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Lus10026992 [exp] 62 / 8e-11 AT1G65410 476 / 2e-169 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Lus10005249 [exp] 62 / 1e-10 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10030674 [exp] 61 / 2e-10 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10035195 [exp] 59 / 5e-10 AT5G14100 333 / 2e-115 ARABIDOPSIS THALIANANON-INTRINSIC ABC PROTEIN 14, ATP-binding cassette I11, non-intrinsic ABC protein 14 (.1) Lus10004583 [exp] 58 / 2e-09 AT4G18050 1660 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Lus10032025 [exp] 57 / 3e-09 AT5G14100 303 / 1e-103 ARABIDOPSIS THALIANANON-INTRINSIC ABC PROTEIN 14, ATP-binding cassette I11, non-intrinsic ABC protein 14 (.1) Lus10004519 [exp] 56 / 6e-09 AT1G02520 636 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G062800 [exp] 306 / 8e-106 AT4G33460 346 / 5e-121 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1) Potri.014G137000 [exp] 63 / 2e-11 AT1G65410 483 / 2e-172 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Potri.016G093600 [exp] 60 / 3e-10 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.002G212701 [exp] 59 / 4e-10 AT1G65410 483 / 2e-172 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Potri.006G123900 [exp] 59 / 5e-10 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.018G132000 [exp] 55 / 9e-09 AT1G67940 390 / 3e-138 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) Potri.001G354900 [exp] 56 / 1e-08 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Potri.006G049300 [exp] 56 / 1e-08 AT2G41700 2741 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) Potri.002G187400 [exp] 55 / 2e-08 AT3G62150 1702 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113200 [exp] 55 / 2e-08 AT3G62150 1871 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10002094 pacid=23151644 polypeptide=Lus10002094 locus=Lus10002094.g ID=Lus10002094.BGIv1.0 annot-version=v1.0 ATGGATTCTTCTGTTCTTTCTCGTCTCTCGGCTTCTTGTTGCGCCCCTCTCAACTCCACCAATCTCCACCGACGAACCCACTTCACTCCATGCGCATCAT CAGCTGCCTCCATTGAAGCGAAGAATCTCAGCTTCTCAGTCACAACGAAGCAAGGGAATTCGGTCCCCATCCTCCAGGATTGCTCCCTCAAAATCCCTTC CGGTCAGCTCTGGATGCTGCTTGGTCCCAACGGCTGCGGCAAATCTACTCTTCTCAAGGTACTTGCTGGTCTGTTAAACCCTAATGATGGAATTTTCCAT GTCAAGAAGCCTAAGAGCTTCGTTTTCCAGAATCCAGATCATCAGGTTGTCATGCCTACGGTGGAAGCATATGTATCCCTTGGTCTTGGCAAATTCAACC TCACGAACGATGAAGTTAGGAGCAGGGTCTCAAAAGCTCTTGATGCTGTCGGCATGGCTTCATACATGCAAAGACCTGTTCAAACTCTTAGTGGTGGTCA GAAGCAGAGGGTTGCCATTGCGGGTGCTCTAGCTGAAGCGTGCAAAGTGCTCTTACTTGATGAGCTGACAACATTTCTAGATGAGACCGACCAGGCTCGA AAGCTCGAGTATGCAGATGGCGCATTGTATATGGAGAAGGGGAGAGTAGTCATGAAAGGTGATGGGTCAAGAATAAAGAATTTCATCGAAGCCAGACAAG CCTCTTACTTCAACCAGATTAATCAGTGA
AA sequence Show only first row Show all	>Lus10002094 pacid=23151644 polypeptide=Lus10002094 locus=Lus10002094.g ID=Lus10002094.BGIv1.0 annot-version=v1.0 MDSSVLSRLSASCCAPLNSTNLHRRTHFTPCASSAASIEAKNLSFSVTTKQGNSVPILQDCSLKIPSGQLWMLLGPNGCGKSTLLKVLAGLLNPNDGIFH VKKPKSFVFQNPDHQVVMPTVEAYVSLGLGKFNLTNDEVRSRVSKALDAVGMASYMQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDETDQAR KLEYADGALYMEKGRVVMKGDGSRIKNFIEARQASYFNQINQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33460		ABCI10, ATNAP13...	embryo defective 2751, ATP-bin...		Lus10002094 [exp]	0	1
AT5G59900			Pentatricopeptide repeat (PPR)...		Lus10012139 [exp]	7.3	0.6520
AT5G06410			DNAJ heat shock N-terminal dom...		Lus10029359 [exp]	16.8	0.6702
AT3G18580			Nucleic acid-binding, OB-fold-...		Lus10038946 [exp]	20.4	0.6131
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10003515 [exp]	22.0	0.6784
AT4G10925			Nuclear transport factor 2 (NT...		Lus10023064 [exp]	58.5	0.6375
AT4G15820			unknown protein		Lus10034169 [exp]	60.8	0.6343
AT1G15215		SHH1, DTF1	SAWADEE homeodomain homolog 1,...		Lus10038276 [exp]	66.0	0.6287
AT4G11060		MTSSB	mitochondrially targeted singl...		Lus10015200 [exp]	100.0	0.6012
AT3G16110		ATPDI4, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10025792 [exp]	109.4	0.5891
AT1G01500			Erythronate-4-phosphate dehydr...		Lus10005124 [exp]	135.1	0.5863

Compare expression of checked genes

Lus10002094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.