Plant FIBer expression Database

Lus10002095 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G74880 176 / 3e-57 NdhO, NDH-O NADH dehydrogenase-like complex \), NAD(P)H:plastoquinone dehydrogenase complex subunit O (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000828
[exp]
238 / 2e-81 AT1G74880 173 / 5e-56 NADH dehydrogenase-like complex \), NAD(P)H:plastoquinone dehydrogenase complex subunit O (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G106500
[exp]
184 / 2e-60 AT1G74880 180 / 6e-59 NADH dehydrogenase-like complex \), NAD(P)H:plastoquinone dehydrogenase complex subunit O (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF11910 NdhO Cyanobacterial and plant NDH-1 subunit O
Representative CDS sequence
>Lus10002095 pacid=23151632 polypeptide=Lus10002095 locus=Lus10002095.g ID=Lus10002095.BGIv1.0 annot-version=v1.0
ATGGCTGCATTCTCTGAAACACTATCAAGAACCACCCACATCCCTCCTCGAATTTATCCATTCCCGCGAAGAAGGTCGACGATTCGGCTTCTGCCAATGA
TCAGAGCTGTGAGCTCAGCTGAACCAGCAAAGGAGAAGGAGGCAGCCCTGCAGACAAAAGCTGCTGATCAGGATCCCTCTACTCCTTCTTCAACAACCCC
TCAGTTGAAGCTTAAGAAGAAACCAGCTTACTCAATGAAGAAAGGGCAGATTGTGAAAGTTGATAAAGACAAGTACCTCAACAGCATCAATTACTTATCA
GTTGGTCATCCACCATATTACAAGGGATTGGATTACATCTATGAAGATCGTGGTGAGGTGCTGGATTTGCGGATCTTTGAGACAGGAGAGTATGCACTTA
TTGCATGGGTTGGAGTACCAACAGCACCACTTTGGTTACCGACAGATATGCTTATCATGTCTGAGAAACTGGATTATGAAAGACTGTGA
AA sequence
>Lus10002095 pacid=23151632 polypeptide=Lus10002095 locus=Lus10002095.g ID=Lus10002095.BGIv1.0 annot-version=v1.0
MAAFSETLSRTTHIPPRIYPFPRRRSTIRLLPMIRAVSSAEPAKEKEAALQTKAADQDPSTPSSTTPQLKLKKKPAYSMKKGQIVKVDKDKYLNSINYLS
VGHPPYYKGLDYIYEDRGEVLDLRIFETGEYALIAWVGVPTAPLWLPTDMLIMSEKLDYERL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G74880 NdhO, NDH-O NADH dehydrogenase-like comple... Lus10002095
[exp]
0 1
AT1G74880 NdhO, NDH-O NADH dehydrogenase-like comple... Lus10000828
[exp]
1.4 0.9622
AT4G22890 PGR5-LIKEA, PGR... PGR5-LIKE A (.1.2.3.4.5) Lus10014135
[exp]
3.2 0.9545
AT2G21530 FHA SMAD/FHA domain-containing pro... Lus10008411
[exp]
4.6 0.9270
AT1G45230 Protein of unknown function (D... Lus10009756
[exp]
4.6 0.9334
Lus10001769
[exp]
6.8 0.9147
AT2G03420 unknown protein Lus10037118
[exp]
6.9 0.9272
AT1G54780 AtTLP18.3, TLP1... thylakoid lumen protein 18.3, ... Lus10035346
[exp]
8.0 0.9332
AT3G29185 Domain of unknown function (DU... Lus10032999
[exp]
10.0 0.9145
AT5G66190 ATLFNR1 ferredoxin-NADP\(+\)-oxidoredu... Lus10028451
[exp]
11.6 0.9329
AT2G21530 FHA SMAD/FHA domain-containing pro... Lus10001966
[exp]
12.4 0.9223

Lus10002095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.