Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13680 1067 / 0 GLS2, ATGSL02, CALS5 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) AT1G06490 901 / 0 CalS7, ATGSL7, ATGSL07 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) AT5G13000 895 / 0 CALS3, ATGSL12 callose synthase 3, glucan synthase-like 12 (.1.2) AT1G05570 880 / 0 ATGSL6, ATGSL06, GSL6, CALS1 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) AT2G31960 879 / 0 ATGSL3, ATGSL03 glucan synthase-like 3 (.1.2) AT3G59100 852 / 0 ATGSL11 glucan synthase-like 11 (.1) AT3G14570 789 / 0 ATGSL4, ATGSL04 glucan synthase-like 4 (.1.2) AT3G07160 788 / 0 CALS9, ATGSL10 glucan synthase-like 10 (.1) AT5G36870 768 / 0 ATGSL9, ATGSL09 glucan synthase-like 9 (.1) AT2G36850 756 / 0 CHOR, ATGSL8, ATGSL08 CHORUS, glucan synthase-like 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033483 [exp] 1190 / 0 AT2G13680 1447 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10020893 [exp] 1189 / 0 AT2G13680 3037 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10003920 [exp] 895 / 0 AT1G05570 3231 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10013744 [exp] 894 / 0 AT1G05570 2981 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10039199 [exp] 894 / 0 AT5G13000 3524 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Lus10037469 [exp] 887 / 0 AT1G05570 3143 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10000829 [exp] 879 / 0 AT1G53570 537 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Lus10001424 [exp] 874 / 0 AT1G06490 2926 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Lus10001056 [exp] 874 / 0 AT1G06490 1596 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G058300 [exp] 1077 / 0 AT2G13680 3190 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Potri.001G012200 [exp] 897 / 0 AT5G13000 3492 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.003G214200 [exp] 897 / 0 AT5G13000 3363 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.001G230000 [exp] 878 / 0 AT5G13000 3157 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.002G058700 [exp] 869 / 0 AT1G06490 2961 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.005G203500 [exp] 866 / 0 AT1G06490 2914 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.015G089300 [exp] 797 / 0 AT2G36850 3066 / 0.0 CHORUS, glucan synthase-like 8 (.1) Potri.011G095100 [exp] 791 / 0 AT3G14570 2863 / 0.0 glucan synthase-like 4 (.1.2) Potri.001G011900 [exp] 761 / 0 AT3G07160 2981 / 0.0 glucan synthase-like 10 (.1) Potri.013G131300 [exp] 741 / 0 AT4G03550 2752 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0111 [flax] [poplar] GT-C PF02364 [flax] [poplar] Glucan_synthase 1,3-beta-glucan synthase component CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10002096 pacid=23151628 polypeptide=Lus10002096 locus=Lus10002096.g ID=Lus10002096.BGIv1.0 annot-version=v1.0 ATGGAAGAACGAGATAGGGGGAAATCACAAAAAGTGTATTACTCTGTGCTGGTCAAAGCCGTTGATAATCTCGATCAGGAAATCTATCGGATCAAACTTC CAGGTCAAGCAAAATTAGGCGAAGGAAAGCCTGAAAATCAGAACCATGCCATCGTATTTACTAGAGGCGAAGCTATGCAGGCAATTGATATGAACCAGGA TAACTATCTAGAAGAAGCTTTCAAAATGCGCAACCTTCTTGAAGAGTTTCACGAGGACCATGGAGTGCGACCACCGACAATTTTAGGTGTTCGTGAGCAT ATCTTCACTGGAGGGATACGATTCCATTATGGGCATCCAGATGTGTTTGATAGAATTTTCCACATAACACGTGGGGGTGTCAGCAAAGCTTCCCGTGGCA TCAACTTGAGCGAGGATATCTTTGCTGGATTCAATTCGACACTACGAAGAGGAAATATAACTCATCACGAGTACATTCAAGTTGGTAAAGGTCGAGATGT GGGGCTCAACCAAATCTCTCTATTTGAAGCAAAAGTTGCATGCGGGAATGGGGAGCAAACTCTCAGCAGGGACATCTATCGACTAGGTCATCGTTTCGAC TTCTTCCGTATGCTGTCCTGTTACTATACAACAATCGGTTTCTATATCAGCTCAATGGTGGTAGTCCTCACAGTTTATGCGTTCTTATACGGAAGAATAT ATTTGGCACTGAGTGGCTTGGAGGGTTCTATAATTAAGTTTGCAAAGCATAGAGGAGATACAGCACTGAAGTCGGCAATGGCTTCACAGTCCGTCGTTCA GCTAGGAATCCTCACAGCGTTGCCCATGGTAATGGAGATGGGGTTAGAGAGAGGTTTCAGAACAGCACTAGGTGACATAATAATCATGCAGCTACAGCTC GCAGCAGTCTTCTTCACCTTCTCTCTAGGAACTAGGGTCCACTACTTTGGTCGAACAGTCCTGCACGGTGGTGCAAAATATAGAGCCATAGGTCGTGGCT TTGTCGTTCGCCACGAGAAGTTTGCAGAAAACTACAGGATGTACTCGAGAAGCCACTTCGTCAAAGCCTTGGAGCTCATGTTACTGCTGATATGTTATCA GATATACGGGAAAGCAGTGAACGACCAAGTAGCTTACATGCTCCTCACAGCTTCCATGTGGTTCTTAGTAAGCTCCTGGCTGTTTGCACCCTTTTTGTTC AACCCGTCAGGATTCGAGTGGCAGAAGATCGTGGATGATTGGGATGACTGGACCAAGTGGATCAACAGCAGAGGAGGAATTGGTGTGCCGGCGAATAAGA GCTGGGAGTCATGGTGGGAAGAAGAACAGGAGCACCTCCAGCACACAGGAATCTCAGGACAGATCTGTGAAGTAATCCTCGCTCTCCGTTTCTTCATCTA TCAGTATGGCATTGTTTACCAGCTCAAAGTTACGAAAGCCACATCTGCTGGACGAGAGCACAGTATATCTGTTTATGGGCTGTCATGGCTGGTCATTGTG GCTCTGATGCTAATCCTGAAGACTGTATCAACAGGTAGAAAGAAATTCAGCGCAGACTTCCAGCTAATGTTCAGACTTCTAAAGTTCATCCTTTTCATCG GTTTCGTGGTCACCCTCATAATCTTGTTTACTACACTCCATCTCACAGTGGGAGATGTGTTCCAGAGCTTGTTAGCCTTCCTCCCAACCGGATGGGCTAT TCTACAGATATCGCAAGCTTGCAAGCCGATAGTGAAAGGGATGAAGATGTGGGGATCAGTCAAGGCATTGGGAAGAGGGTACGAGTACATGATGGGGTTA ATACTGTTTCTCCCGATAGCAGTACTTGCATGGTTCCCATTTGTATCAGAGTTCCAGAACAGACTTCTATTCAACCAAGCCTTCAGCAGAGGCCTTCAGA TCCAACGTATCCTTGCTGGTGGAAAGAAGCACAAGTCACCTGGCAATCCTGGAGGACGTGCTGAAGCAAAGGCTTACATGGGTGGTTCTAGGAGCCCCGG TCCAGGTTCGAGGAGCCCCTGTCCAGGTTCGAGGAGCCCTGGTCCGAGATCAAGGAGTCCTGTTCCTGGTTCGAGAGGCGCAAGCAGGCCTACCTCGCCA CTTCATCCTCGTTTGAGTGGTCTGAATCTTGATTCCCCAACTGGGAGAGGGTCTGAAGATGGGAAAAGCCAATGCCACCCTTTGCCTCTTCCACCAACTT CCCCTACTAGTCCATCTTCTTCCGTGACAAGCACTAGAAGTCCCGGAGCAACTGAGGGTGCAGCTGCAACTCTCTCGAGATGGAAGAAGGGAAAGCTTCT TGGAAGGGGAACTTTCGGTCAAGTTTACCTCGGATTTAATAGTGTGAATGGGCAGATGTGTGCAATCAAAGAAGTTAGGGTTGTCTCTGATGATCAGACG TCGAAAGAATGTCTCAAGCAACTGAACCAGGAGATAAATTTGCTGAGCCAATTATCACATCCGAATATAGTTAAATATCATGGAAGTGAATTGAGTGAGG AGACCCTTTCCGTTTATCTCGAGTTCGTCTCGGGTGGTTCCATTCACAAATTACTGCAAGAATATGGTGCCTTTAAGGAGCCTGTCATCCAAAATTATAC CAGGCAGATTCTGTCCGGACTAGCCTACTTACATGGAAGAAATACAGTTCACAGGGATATCAAAGGAGCCAACATATTAGTTGATCCTAATGGTGAAATC AAATTGGCCGACTTTGGCATGGCTAAACATATTACAGCTTGCTCTTCGATGCTTTCGTTCAAGGGAAGTCCTTACTGGATGGCACCTGAGGTTGTAATGA ATACAAATGGATACAGCCTTGCAGTGGATATATGGAGTTTGGGATGTACGATTCTTGAAATGGCAGCTGGAAAACCTCCTTGGAGTCAGTATGAAGGGGT GGCTGCTATATTTAAAATTGGCAACAGCAAGGACATGCCTGAAATACCATATTTCCTTTCTGACGAGGCTAAGAGTTTCATAAAGCTGTGCTTGCAGCGA GATCCATCTTTACGCCCTACAGCATCACAGTTGTTAGACCATCCTTTCCTCCGCGACCATGCAATGAGAGTTCCTAATAGCAATCCTTCTTCACCATACA ACTTTGATGGAAGCCGCACCCCGCCCGCATTGGATCTTCAACCAAACAGAAATGGCATTACCTCCCATGAGGCGGAGTATCCTATCAAGCATGTCATCAC TAATGCCAGAGGCACAAGAACCTCAAGGGATGACGTGAGGATGATAACCTCTCTCCCTGTATCCCCTTGCTCAAGCCCGTTGCGCCAGAATGGACCGGCT CATAGAAGCTGTTTCCTGTCTCCTCCACATCTCTACCCTCTGATGGGCCAAAATGGTAGCTACAACAACGTATCTGACTTCTTGCTACAACCAGTGAGAC AACCCCCTGCGCTATCTCACAGCGACTTTGTCCTCGACTCCAACTCCCTGATGAAACAAATGACGGGCCCATCATCGCAACCAATAATAAGACGCAACTC ATGA
AA sequence Show only first row Show all	>Lus10002096 pacid=23151628 polypeptide=Lus10002096 locus=Lus10002096.g ID=Lus10002096.BGIv1.0 annot-version=v1.0 MEERDRGKSQKVYYSVLVKAVDNLDQEIYRIKLPGQAKLGEGKPENQNHAIVFTRGEAMQAIDMNQDNYLEEAFKMRNLLEEFHEDHGVRPPTILGVREH IFTGGIRFHYGHPDVFDRIFHITRGGVSKASRGINLSEDIFAGFNSTLRRGNITHHEYIQVGKGRDVGLNQISLFEAKVACGNGEQTLSRDIYRLGHRFD FFRMLSCYYTTIGFYISSMVVVLTVYAFLYGRIYLALSGLEGSIIKFAKHRGDTALKSAMASQSVVQLGILTALPMVMEMGLERGFRTALGDIIIMQLQL AAVFFTFSLGTRVHYFGRTVLHGGAKYRAIGRGFVVRHEKFAENYRMYSRSHFVKALELMLLLICYQIYGKAVNDQVAYMLLTASMWFLVSSWLFAPFLF NPSGFEWQKIVDDWDDWTKWINSRGGIGVPANKSWESWWEEEQEHLQHTGISGQICEVILALRFFIYQYGIVYQLKVTKATSAGREHSISVYGLSWLVIV ALMLILKTVSTGRKKFSADFQLMFRLLKFILFIGFVVTLIILFTTLHLTVGDVFQSLLAFLPTGWAILQISQACKPIVKGMKMWGSVKALGRGYEYMMGL ILFLPIAVLAWFPFVSEFQNRLLFNQAFSRGLQIQRILAGGKKHKSPGNPGGRAEAKAYMGGSRSPGPGSRSPCPGSRSPGPRSRSPVPGSRGASRPTSP LHPRLSGLNLDSPTGRGSEDGKSQCHPLPLPPTSPTSPSSSVTSTRSPGATEGAAATLSRWKKGKLLGRGTFGQVYLGFNSVNGQMCAIKEVRVVSDDQT SKECLKQLNQEINLLSQLSHPNIVKYHGSELSEETLSVYLEFVSGGSIHKLLQEYGAFKEPVIQNYTRQILSGLAYLHGRNTVHRDIKGANILVDPNGEI KLADFGMAKHITACSSMLSFKGSPYWMAPEVVMNTNGYSLAVDIWSLGCTILEMAAGKPPWSQYEGVAAIFKIGNSKDMPEIPYFLSDEAKSFIKLCLQR DPSLRPTASQLLDHPFLRDHAMRVPNSNPSSPYNFDGSRTPPALDLQPNRNGITSHEAEYPIKHVITNARGTRTSRDDVRMITSLPVSPCSSPLRQNGPA HRSCFLSPPHLYPLMGQNGSYNNVSDFLLQPVRQPPALSHSDFVLDSNSLMKQMTGPSSQPIIRRNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10002096 [exp]	0	1
AT1G53570		MAPKKK3, MAP3KA	MAP KINASE KINASE KINASE 3, mi...		Lus10000829 [exp]	1.0	0.8972
AT2G40410			Staphylococcal nuclease homolo...		Lus10040967 [exp]	2.4	0.8599
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10005988 [exp]	2.4	0.8499
AT2G17480		ATMLO8, MLO8	MILDEW RESISTANCE LOCUS O 8, S...		Lus10022096 [exp]	4.7	0.7865
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10004268 [exp]	5.3	0.8229
					Lus10040816 [exp]	5.3	0.8351
AT5G57580			Calmodulin-binding protein (.1...		Lus10018437 [exp]	6.5	0.8233
AT4G36660			Protein of unknown function (D...		Lus10010810 [exp]	14.1	0.8022
AT3G51130			unknown protein		Lus10014270 [exp]	15.0	0.8331
AT5G08710		RUG1	RCC1/UVR8/GEF-like 1, Regulato...		Lus10035957 [exp]	20.2	0.7910

Compare expression of checked genes

Lus10002096 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.