Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13680 1838 / 0 GLS2, ATGSL02, CALS5 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) AT5G13000 1267 / 0 CALS3, ATGSL12 callose synthase 3, glucan synthase-like 12 (.1.2) AT2G31960 1229 / 0 ATGSL3, ATGSL03 glucan synthase-like 3 (.1.2) AT1G05570 1228 / 0 ATGSL6, ATGSL06, GSL6, CALS1 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) AT3G14570 980 / 0 ATGSL4, ATGSL04 glucan synthase-like 4 (.1.2) AT3G59100 963 / 0 ATGSL11 glucan synthase-like 11 (.1) AT1G06490 900 / 0 CalS7, ATGSL7, ATGSL07 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) AT5G36870 893 / 0 ATGSL9, ATGSL09 glucan synthase-like 9 (.1) AT4G03550 662 / 0 ATGSL5, PMR4, GSL5, ATGSL05 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) AT2G36850 633 / 0 CHOR, ATGSL8, ATGSL08 CHORUS, glucan synthase-like 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020893 [exp] 1982 / 0 AT2G13680 3037 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10033482 [exp] 1648 / 0 AT2G13680 1556 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10039199 [exp] 1230 / 0 AT5G13000 3524 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Lus10003920 [exp] 1210 / 0 AT1G05570 3231 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10037469 [exp] 1143 / 0 AT1G05570 3143 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10042478 [exp] 931 / 0 AT3G14570 2889 / 0.0 glucan synthase-like 4 (.1.2) Lus10001424 [exp] 909 / 0 AT1G06490 2926 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Lus10032463 [exp] 657 / 0 AT3G07160 3063 / 0.0 glucan synthase-like 10 (.1) Lus10033689 [exp] 635 / 0 AT4G03550 2828 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G058300 [exp] 1917 / 0 AT2G13680 3190 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Potri.001G012200 [exp] 1260 / 0 AT5G13000 3492 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.003G214200 [exp] 1243 / 0 AT5G13000 3363 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.001G230000 [exp] 1201 / 0 AT5G13000 3157 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.011G095100 [exp] 956 / 0 AT3G14570 2863 / 0.0 glucan synthase-like 4 (.1.2) Potri.005G203500 [exp] 945 / 0 AT1G06490 2914 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.002G058700 [exp] 940 / 0 AT1G06490 2961 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.001G011900 [exp] 650 / 0 AT3G07160 2981 / 0.0 glucan synthase-like 10 (.1) Potri.013G131300 [exp] 640 / 0 AT4G03550 2752 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) Potri.015G089300 [exp] 636 / 0 AT2G36850 3066 / 0.0 CHORUS, glucan synthase-like 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04652 [flax] [poplar] Vta1 Vta1 like CL0111 [flax] [poplar] GT-C PF02364 [flax] [poplar] Glucan_synthase 1,3-beta-glucan synthase component
Representative CDS sequence Show only first row Show all	>Lus10002097 pacid=23151631 polypeptide=Lus10002097 locus=Lus10002097.g ID=Lus10002097.BGIv1.0 annot-version=v1.0 ATGATCAATACAGAAGCGTATCCGCATTTAATTAGGCGGCCGTCGCGTAGTGCGGCTACCACAACCTTTTCCACTGAGGTATTTGACAATTCAGTTGTTC CTTCCTCTTTGGAATCAATCAAACCGATTCTCCGAACAGCAAACGAGATCCAGAATGAACGCCCTCGGGTTGCCTATCTCTGTCGGTTTTATGCATTTGA AAAAGCGCATAGACTGGATCCTAGCTCTAGTGGACGTGGTGTCAGGCAGTTCAAAACAGCATTATTGCAAAGAGTAGAAAGGGAAAATGCTTCCAGTATC GCATCCCGGGTTAAGAAGACGGATGCGCGCGAAATCCAGAGCTTCTATTACCAGTACTATAAACAATATGTCGAAGCACTCGAGCAGGGCGAGCAGGCAG ATAGAGCTCAACTTGGCAAGGTCTATGAGACAGCAGGAGTTCTTTATGAAGTACTTTGTGCCGTTAATAAGGCTGAGAAAGTTGAAGAGGTTGCTCCTGA GATTATTGCTGCAGCACGAGACATCCAAGAGAAGAAGGAAATCTATGCTCCATACAACATTCTTCCCTTGGATTCTGCCGGGGCCTCACAGTCAATCATG CAACTCGAGGAGGTCAAGGCTGCTGTTGCAGCACTATGGAACACCCGAGGCTTGTCTTGGCCTTCATCTTTTGAGCAGCACAGGCAGAAAGCTGGAGATC TGGACCTTCTTGATTGGCTAAGGGCCATGTTTGGCTTCCAGAGAGACAGTGTTCGGAACCAAAGGGAGCATTTGATATTGCTGCTTGCCAACAACCATAT AAGGCTCAACCCCAAGCCTGAACCTCTTAACAAGGCACGTGCTGTACCTGATCTTGATGAAAGAGCTGTAGATGCAGTTATGCAGAAGATTTTTAAGAAC TATAAAAATTGGTGCAAATTTTTAGGACGAAAGCACAGTTTGCGACTTCCTCAAAGCCAGCCTGAAATCCAGCAAAGGAAAATACTTTACATGGGTTTGT ATCTTCTTATCTGGGGTGAAGCAGCTAATGTTCGGTTCATGCCAGAGTGTCTATGCTATATCTTTCACAATATGGCTTATGAACTCCATGGCTTGTTGGC TGGAAATGTCAGTATCGTAACTGGAGAAAATATTAAGCCTTCTTATGGTGGAGATGACGAAGCATTCCTGAGGAAAGTCATAGCACCAGTTTACCGAGTA ATAGCAAAGGAAGCAAGTAAGAGTCAAAATGGTATGGCTTCTAGCACAGAATGGTGCAACTATGATGATCTGAATGAGTATTTCTGGTCATCTGATTGCT TCTCTCTTGGTTGGCCAATGCGTGATGATGGTGAATTCTTCAAGTCAACACGCGATGCAGCTAAGGGAAAGAAGACTTCTCAAGAAAATTCTGGAAGCAC GGGAAAATCATATTTTGTTGAAACTCGAGCCTTCTGGCACATATTTCGAAGCTTTGACAGATTGTGGACTTTTTATGTCCTGGCCTTTCAGTTAATGATC ATCTACGCCTGGAGTGGAGTAGCGATACAAAATATACTTAGGAGGGATGTATTGTATTACCTATCAAGTATCTTCATTACAGCAGCCTATCTTCGACTCC TGCAGAGTATTCTAGACCTTGTTCTCAACTTCCCTGGATACCACAGATGGAAATTTACCGATGTTCTGAGAAACATTCTGAAGATCATTGTTAGTTTTGC ATGGGCTATTATTCTTCCACTTTGCTATTCAGGAAACTTCAAACAAGTGGGTGGTTTCACTAAAGGAATGAATTTCCTCCGCACAGTGAAGAGTATTCCT CCAATATACTTGTTTTCTGTAGTCATATACATGATTCCGAATATCTTGGCGGCTTGTTTGTTCATCTTCCCCATGCTTAGAAGATGGATTGAGAACTCAG ACTGGCTCATTGTCAGATTACTGTTGTGGTGGTCACAGCCAAGGATTTATGTTGGAAGGGGAATGCATGAAAGTCAATTTTCACTAATAAAGTATACAAT CTTTTGGGTCTTGCTTTTGGCTTCCAAGTTCACCTTCAGCTTCTTTATCCAGATAAAGCCCTTGGTAAAGCCAACGAAAGACATAATGAACATTCGACAT GTAGAGTATACTTGGCATGAATTATTTCCTTATGCTCGGCACAATTATGGCGCGGTTTTGTCACTCTGGGCACCAACAATCTTGATACGAACTTTAGGTA TGCTGAGGTCACGGTTTCAGTCGTTGCCAGGCGCATTTAACGCCTATTTGGTGCCTTCTGACAAGATGCGGAAAAAAGGATTTTCCTTGTCAAAAAGATT CGCTGACGTTACAGCAAATAGAAGAAGTGAAGCTGCAAAATTTGCCCAGCTGGAGATGGATTTGTTACTAGTTCCCTATACATCAGATCCTAGCATCAAA TTGATCCAGTGGCCTCCTTTTTTGCTTGCAAGCAAGATCCCTATAGCTCTGAATATGGCAGCTCAGTTCCGATCAAAAGATTCTGACTTATGGAAACGTA TATGTGCTGACGAGTATATGAAATGCGCTGTGATTGAATGCTATGAATCCTTCAAGCAAGTCCTCAATATTTTGATAGTTGGGGAAAACGAAAAGAGGAT CATTGGTATCATCATCAAAGAAATAGAGAGTCACGTTTCAAAGGGCACACTACTTGCAAATTTCAGAATGGCTTCATTGCCACCTCTTTGTGAAAAAGTT GTGGTGCTAGTGGGAATTCTGAAAGATGGTCATCCTTCTGAGAGAGATAACGTGGTATTGTTGCTTCAAGACATGTTGGAATTAGTTACCCGTGATCTAA TGGTGAACGAAAACCGTGAATTAGTAGACATCGGACACAGTGGAAAGGATTCTGGAAGACAAATTTTTGCTGGTACTGATCCTAGACCTGCTATAACGTT CCCTCCTCCAGTTTCAGCTCAGTGGGATGAACAGATAAGAAGACTTCATCTTCTATTGACGGTAAAAGAATCTGCCATGGACGTACCAGCAAACCTTGAA GCACGCAGGAGGATTGCTTTTTTCACAAATTCCTTGTTCATGGATATGCCACGTGCTCCACGAGTACGCAAAATGCTTTCATTCAGTGTCATGACCCCAT ACTATAGTGAGGAGACTGTCTATTCCAAATCTGACCTAGAAATGGAAAATGAAGATGATGAATGGACGAACTTTATGGAACGAATTAATTGTAAGAAAGA GAGCGAGGTTTGGGAAAATGAAGAAAACATTTTGCAGCTCAGGCATTGGGCATCATTAAGGGGTCAAACTCTCTGCCGAACACTCAGAGGAATGATGTAT TATAGAAGAGCTCTGAAACTTCAGGCTTTCCTTGATATGGCTAATGAGAGTGATATGAAACTGGTTTCTGATTTCCGGTATGCAGAGATATTAGCTGGCT ATAAAGCCATTACAAATCCGAGTGAGGAAGACAAGAAAAGTCAAAGGTCCCTTTCTGCGCAGTTGGAGGCAGTAGCTGATATGAAATTCACCTATGTAGC CACCTGTCAGATTTACGGGAATCAGAAGAGAAAAGGAGATCGGCATGCAACAAACATCCTTAATTTGATGGTTAAGTACGTTATATCTGGGGTCTAG
AA sequence Show only first row Show all	>Lus10002097 pacid=23151631 polypeptide=Lus10002097 locus=Lus10002097.g ID=Lus10002097.BGIv1.0 annot-version=v1.0 MINTEAYPHLIRRPSRSAATTTFSTEVFDNSVVPSSLESIKPILRTANEIQNERPRVAYLCRFYAFEKAHRLDPSSSGRGVRQFKTALLQRVERENASSI ASRVKKTDAREIQSFYYQYYKQYVEALEQGEQADRAQLGKVYETAGVLYEVLCAVNKAEKVEEVAPEIIAAARDIQEKKEIYAPYNILPLDSAGASQSIM QLEEVKAAVAALWNTRGLSWPSSFEQHRQKAGDLDLLDWLRAMFGFQRDSVRNQREHLILLLANNHIRLNPKPEPLNKARAVPDLDERAVDAVMQKIFKN YKNWCKFLGRKHSLRLPQSQPEIQQRKILYMGLYLLIWGEAANVRFMPECLCYIFHNMAYELHGLLAGNVSIVTGENIKPSYGGDDEAFLRKVIAPVYRV IAKEASKSQNGMASSTEWCNYDDLNEYFWSSDCFSLGWPMRDDGEFFKSTRDAAKGKKTSQENSGSTGKSYFVETRAFWHIFRSFDRLWTFYVLAFQLMI IYAWSGVAIQNILRRDVLYYLSSIFITAAYLRLLQSILDLVLNFPGYHRWKFTDVLRNILKIIVSFAWAIILPLCYSGNFKQVGGFTKGMNFLRTVKSIP PIYLFSVVIYMIPNILAACLFIFPMLRRWIENSDWLIVRLLLWWSQPRIYVGRGMHESQFSLIKYTIFWVLLLASKFTFSFFIQIKPLVKPTKDIMNIRH VEYTWHELFPYARHNYGAVLSLWAPTILIRTLGMLRSRFQSLPGAFNAYLVPSDKMRKKGFSLSKRFADVTANRRSEAAKFAQLEMDLLLVPYTSDPSIK LIQWPPFLLASKIPIALNMAAQFRSKDSDLWKRICADEYMKCAVIECYESFKQVLNILIVGENEKRIIGIIIKEIESHVSKGTLLANFRMASLPPLCEKV VVLVGILKDGHPSERDNVVLLLQDMLELVTRDLMVNENRELVDIGHSGKDSGRQIFAGTDPRPAITFPPPVSAQWDEQIRRLHLLLTVKESAMDVPANLE ARRRIAFFTNSLFMDMPRAPRVRKMLSFSVMTPYYSEETVYSKSDLEMENEDDEWTNFMERINCKKESEVWENEENILQLRHWASLRGQTLCRTLRGMMY YRRALKLQAFLDMANESDMKLVSDFRYAEILAGYKAITNPSEEDKKSQRSLSAQLEAVADMKFTYVATCQIYGNQKRKGDRHATNILNLMVKYVISGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10002097 [exp]	0	1
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10027599 [exp]	1.7	0.9345
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10015946 [exp]	2.2	0.9387
AT4G30990			ARM repeat superfamily protein...		Lus10042447 [exp]	2.8	0.9359
AT4G10320			tRNA synthetase class I (I, L,...		Lus10024041 [exp]	4.0	0.9278
AT2G46200			unknown protein		Lus10000549 [exp]	4.5	0.9142
AT5G58410			HEAT/U-box domain-containing p...		Lus10026420 [exp]	5.0	0.9223
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Lus10009218 [exp]	5.8	0.8910
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Lus10007442 [exp]	6.9	0.9182
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10038248 [exp]	7.5	0.9165
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10042589 [exp]	8.5	0.9149

Compare expression of checked genes

Lus10002097 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.