Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49970 691 / 0 PDX3, ATPPOX HOMOLOG OF YEAST PYRIDOXINE AUXOTROPHY 3, pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.1), pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.2) AT5G64070 486 / 2e-152 PI-4KBETA1, PI4KBETA1 phosphatidylinositol 4-OH kinase beta1 (.1) AT5G09350 463 / 7e-144 PI-4KBETA2, PI4KBETA2 phosphatidylinositol 4-OH kinase beta2 (.1) AT1G49340 117 / 4e-26 ATPI4K ALPHA, ATPI4KALPHA Phosphatidylinositol 3- and 4-kinase family protein (.1.2) AT1G51040 114 / 4e-26 Protein kinase superfamily protein (.1) AT1G60490 64 / 7e-10 PI3K, ATVPS34 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) AT3G48190 47 / 0.0001 PIG1, ATATM, ATM pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) AT1G50030 47 / 0.0001 TOR target of rapamycin (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000833 [exp] 1181 / 0 AT5G64070 776 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1) Lus10000272 [exp] 823 / 0 AT5G64070 764 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1) Lus10040481 [exp] 114 / 3e-25 AT1G49340 1556 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Lus10011285 [exp] 105 / 3e-22 AT1G49340 3010 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Lus10030885 [exp] 66 / 3e-10 AT1G60490 1397 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Lus10030605 [exp] 60 / 2e-08 AT1G60490 1325 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Lus10037246 [exp] 47 / 0.0001 AT1G50030 4101 / 0.0 target of rapamycin (.1.2) Lus10035661 [exp] 47 / 0.0002 AT1G50030 2590 / 0.0 target of rapamycin (.1.2) Lus10019489 [exp] 44 / 0.0008 AT3G48190 3373 / 0.0 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G102600 [exp] 716 / 0 AT5G49970 761 / 0.0 HOMOLOG OF YEAST PYRIDOXINE AUXOTROPHY 3, pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.1), pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.2) Potri.005G059000 [exp] 620 / 0 AT5G64070 1497 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1) Potri.007G109000 [exp] 587 / 0 AT5G64070 1412 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1) Potri.005G159500 [exp] 109 / 2e-27 AT5G49970 145 / 2e-41 HOMOLOG OF YEAST PYRIDOXINE AUXOTROPHY 3, pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.1), pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.2) Potri.009G113700 [exp] 114 / 3e-25 AT1G49340 3062 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Potri.004G152400 [exp] 112 / 2e-24 AT1G49340 2964 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Potri.012G075100 [exp] 67 / 9e-11 AT1G60490 1388 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Potri.001G289200 [exp] 50 / 9e-06 AT1G50030 4080 / 0.0 target of rapamycin (.1.2) Potri.009G084500 [exp] 49 / 2e-05 AT1G50030 4038 / 0.0 target of rapamycin (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10590 [flax] [poplar] PNP_phzG_C Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CL0336 [flax] [poplar] FMN-binding PF01243 [flax] [poplar] Putative_PNPOx Pyridoxamine 5'-phosphate oxidase CL0063 [flax] [poplar] NADP_Rossmann PF03853 [flax] [poplar] YjeF_N YjeF-related protein N-terminus CL0016 [flax] [poplar] PKinase PF00454 [flax] [poplar] PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase
Representative CDS sequence Show only first row Show all	>Lus10002098 pacid=23151643 polypeptide=Lus10002098 locus=Lus10002098.g ID=Lus10002098.BGIv1.0 annot-version=v1.0 ATGAGGGAAAACAGTAAAAAAGAGGAGGAGGAGTTGACGTCGAGCTCTGATGGCTTCTTCAAGAGGCTTTTGAGAGATTCAAATAGATCTGAAGATGATG AGGTGACATCTAGTTCAGATGGTTTTTTCAAGAGACTCTTGAAAGATTCTGGGAAAGGGGAAGAGGATGAGCTGACTTCACCAACAGATGGTTTTTTTAA GAAGCTTTTGAAGGATCATAACAAAGGTGAAGAGGAGGAGTTGACCGCAAGTTCAGAAGGATTTTTCAAAAAGTTGTTTCGTGATAGTAAAGGTGACGGA GATGACAGATTACTTTCTAAATCAATTGAAGATGTTGAAAGGGATGGGTTTTTCAGGAAGTTCTTCAAAGAGAAGTTTGATGACAAGAAAGATGGGAATG AAAGACTTGACGATGGAAGGATCAATGCTTCTGAGAAATTTGCAAAATCTGTAGAGGATGATGAAAGGGATGGATTCTTCCGTAAATTGTTTAAGGATAA GTCTGAGAAGTATGGTCCCGATAAGATCAATGAAGTGAATGCCAATGGCGAGGAGGAAGAATCTTCTGATTTATCTCTGTTCAGAAAACTATTTCGTGTG CACCCTGAAGATGTAAAAAGTACGCTGGCAAATGAAAGTAATAACAATGGACATGTTAGTTTGTCTGAAAGCAGCCCAGGGACAGAGAAATTTTTTCGCA AACTGTTCAGAGACCGGGACCGTTCAGTTGAAGATTCCGAGTTGTTGAGTGCCAAGAAGAACAAGGAGAAGCGCCCTGGGTCACCAAAGCAACATAATGA TAAGTCAAACGCAAAGCCACCACTCCCAAATCACTCTGCTGCACAATTGAGAAAAGGAGCTTATCATGAATCCTTGGATTTTGTATTATCGCTATGTGAA ACTTCCTACTTTTTAGTGGATGTATTTCCTGTTGAAGATCGCAAAAGTGCCCTTCGAGAGGAAGAAGGAATGGTAAAAGTGCTGCTTAATCTCCACACCA GTCTACTGAATTTTAGGCCTGAAAACACTATGAATAATGTCATCAATTCCAAAGATTCCTCTGGCTCTCAAAAGCTTTCTAGAGGAGGAATTCCTCTTGC AAATGGAGATGCATTGTTGCAAAAGCCACCTCCATGGGCATATCCGTTATGGACTACACAGGAAGCATACCGGAACAGTAGTGATAGAATGTCAAGATCC ACAGCTGAAGCCATTGATCAGGCAATGTCCCATTCTTCGGAAGCAAAGTTAAAGGTTGTCACTGTGAGTCTTTCTGTGGAGAGGCGGACAATAGACTCAA GACTAAAAAGTGAAGCACCTGATTTACACTCTGGCATCCATCGCAGTAATTTGCGGAAAAAGGCAGCAGATGGCTGTGATTTTGAATGGGTAAGGGTCGT GCTGACATCAGATTCTGGAGCTAAAATGGAAGATATTGGGGATGAAGGGCCACCACGTAGAAGGGAGCATCGTCGTGTTCCAAGCACCATTGCAATAGAA GAAGTAAAGGCTGCAGCAGCCAAGGGTGAAGCACCTCCCGGACTTCCTCTGAAAGGAGCCGGACAAGATTCATCAGATGCCCAACCAAGGGTAAATGGTG GCACTCCAAGAGCCACTGATCCCTTATCAGGCGAACTTTGGGAGGTGAAGAAAGATAGAATACGCAAAGCTTCAGCTTATGGGAAGTTACCCGGTTGGAA TTTGCAATCTGTGAAGGATAGACATAATGGGAACCTTTTATTGGATGAAGAAGGTCATATTATACATATTGACTTTGGGTTCATGCTCTCCAATTCACCT GGCGGAGTAAATTTCGAGAGTGCACCTTTCAAGTTAACACGGGAACTTCTTGAGGTCATGGACTCTGATGCAGAGGGAATTCCAAGTGAATTTTTTGACT ACTTCAAGGTTTTGTGTATTCAAGGATTCTTAACTTGTCGTAAGCATGCGGAGCGGATAATTCTTCTTGTCGAGATGTTGCAGGATTCCGGGTTTCCTTG CTTTAAAGGAGGTCCGAGGACTATACAAAACCTAAGAAAACGGTTTCATCTAAGTTTGACAGAAGAGGCTCTATCTCGTCCGGTTTTGAGTTCGTCTGGT TTGATTTGCTCGTTTTTGGCTCGAGGGATCGTGACCATGTCTAATTCGGATACCGTCACGTACCTCACCCAGCGAGAAGCTGCCGAAATCGACGAGATTC TCATGGGCCCTCTGGGATTCAGCGTCGATCAGTTGATGGAATTGGCGGGTTTAAGCGTTGCTGCTGCCATATCTGAGGTGTATAAACCAACCGAGTACAA TCGCGTTCTCGTCATTTGCGGTCCTGGGAATAACGGTGGGGATGGATTAGTTGCTGCTCGTCATCTGTTTCACTTTGGATACAGACCTTTCATTTGTTAC CCGAAGATGACTCCTAAACCTCTTTATTCTGGTCTAGTTATTCAGCTGGAATCTCTTTCTATTCCTTTCGTGGCTGTGGAAGATTTGCCATCTGACTTGT CTAAGGAATTCGATATTATCATAGATGCGATGTTTGGGTTCTCATTCCATGGTGACCCAAGACCACCTTTTGATGATCTCATAAAAAAATTGGCGGACTT ATATGATCCTAATGCTGCTGGCCAAAGGACACCTTCCATTATTTCTGTGGATATCCCATCTGGGTGGCATGTTGAAGATGGAGATGTTAATGGTGGAGGC ATCAAACCCGACATGTTGGTTTCTTTAACTGCTCCAAAGTTAGGAGCGAAGAGGTTTTTAGGGATGTACCACTTTCTAGGCGGTAGATTTGTCCCGCCAG CTGTTCGAGATAAATATAAGCTTTGTCTTCCACCATACCCCGGAAATTCCATGTGTGTTCGAATCGGAAGTCCTGCTCAAGTTGATATATCAGCACTCAG GGAGAACTATATCTCTCCAGAGTTCCTTGAGGAGCTGGTGGCAGGAGATCCATTTGTTCAGTTCCGCAGATGGTTTGATGAGGCTGTAGAGGCTGGATTG AAGGAGCCGAATGCTATGGGTTTGTCCACAGTTGGGAAGGATGGGAAGCCCTCGTCAAGGATGGTTCTGCTAAAAGGGTTTGATCACGATGGGTTTGTTT GGTACACCAATTATGAGAGTAAAAAAGCACATGATCTATCTGAAAATCCTGGAGCATCACTCCTTTTCTATTGGCCCGGGCTTAATCGGCAGGTAAGGGT GGAGGGATCTGTGCAGAAGGTTTCTGAAGAAGAATCTGAACAGTACTACCACAGCCGTCCTCGAGGAAGTCAAATGGGAGCAATAGTGAGCAAACAGAGT TGTGTAATTCCTAGAAGAGAAGTTTTATACCAGGAATACAAAGAACTAGAGGAGAAGTATTCTGATGGGAGTGTGATTCCAAAACCCATAAACTGGGGAG GATACAGGCTTAAACCAGAGCTTTTTGAGTTTTGGCAGGGGCAGCAATCCCGCTTACATGACAGATTGCAGTATACTCCTGAAGAGACTCATGGGAAACG AGTTTGGAAAATTGTCCGATTGGCTCCATGA
AA sequence Show only first row Show all	>Lus10002098 pacid=23151643 polypeptide=Lus10002098 locus=Lus10002098.g ID=Lus10002098.BGIv1.0 annot-version=v1.0 MRENSKKEEEELTSSSDGFFKRLLRDSNRSEDDEVTSSSDGFFKRLLKDSGKGEEDELTSPTDGFFKKLLKDHNKGEEEELTASSEGFFKKLFRDSKGDG DDRLLSKSIEDVERDGFFRKFFKEKFDDKKDGNERLDDGRINASEKFAKSVEDDERDGFFRKLFKDKSEKYGPDKINEVNANGEEEESSDLSLFRKLFRV HPEDVKSTLANESNNNGHVSLSESSPGTEKFFRKLFRDRDRSVEDSELLSAKKNKEKRPGSPKQHNDKSNAKPPLPNHSAAQLRKGAYHESLDFVLSLCE TSYFLVDVFPVEDRKSALREEEGMVKVLLNLHTSLLNFRPENTMNNVINSKDSSGSQKLSRGGIPLANGDALLQKPPPWAYPLWTTQEAYRNSSDRMSRS TAEAIDQAMSHSSEAKLKVVTVSLSVERRTIDSRLKSEAPDLHSGIHRSNLRKKAADGCDFEWVRVVLTSDSGAKMEDIGDEGPPRRREHRRVPSTIAIE EVKAAAAKGEAPPGLPLKGAGQDSSDAQPRVNGGTPRATDPLSGELWEVKKDRIRKASAYGKLPGWNLQSVKDRHNGNLLLDEEGHIIHIDFGFMLSNSP GGVNFESAPFKLTRELLEVMDSDAEGIPSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFKGGPRTIQNLRKRFHLSLTEEALSRPVLSSSG LICSFLARGIVTMSNSDTVTYLTQREAAEIDEILMGPLGFSVDQLMELAGLSVAAAISEVYKPTEYNRVLVICGPGNNGGDGLVAARHLFHFGYRPFICY PKMTPKPLYSGLVIQLESLSIPFVAVEDLPSDLSKEFDIIIDAMFGFSFHGDPRPPFDDLIKKLADLYDPNAAGQRTPSIISVDIPSGWHVEDGDVNGGG IKPDMLVSLTAPKLGAKRFLGMYHFLGGRFVPPAVRDKYKLCLPPYPGNSMCVRIGSPAQVDISALRENYISPEFLEELVAGDPFVQFRRWFDEAVEAGL KEPNAMGLSTVGKDGKPSSRMVLLKGFDHDGFVWYTNYESKKAHDLSENPGASLLFYWPGLNRQVRVEGSVQKVSEEESEQYYHSRPRGSQMGAIVSKQS CVIPRREVLYQEYKELEEKYSDGSVIPKPINWGGYRLKPELFEFWQGQQSRLHDRLQYTPEETHGKRVWKIVRLAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49970		PDX3, ATPPOX	HOMOLOG OF YEAST PYRIDOXINE AU...		Lus10002098 [exp]	0	1
AT4G02030			Vps51/Vps67 family (components...		Lus10041387 [exp]	1.0	0.9074
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10034792 [exp]	3.2	0.8855
AT5G11700			unknown protein		Lus10011144 [exp]	4.9	0.8786
AT5G45190			Cyclin family protein (.1.2)		Lus10041213 [exp]	6.0	0.8780
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10025070 [exp]	7.3	0.8468
AT5G02810		APRR7, PRR7	pseudo-response regulator 7 (....		Lus10019899 [exp]	7.5	0.8543
AT3G49490			unknown protein		Lus10015581 [exp]	8.5	0.8566
AT3G51130			unknown protein		Lus10014270 [exp]	11.5	0.8558
AT1G73920			alpha/beta-Hydrolases superfam...		Lus10032476 [exp]	12.6	0.8327
AT4G36210			Protein of unknown function (D...		Lus10028363 [exp]	13.0	0.8373

Compare expression of checked genes

Lus10002098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.