Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31390 72 / 4e-16 STH pfkB-like carbohydrate kinase family protein (.1) AT3G59480 67 / 1e-14 pfkB-like carbohydrate kinase family protein (.1) AT1G06020 65 / 1e-13 pfkB-like carbohydrate kinase family protein (.1) AT1G06030 64 / 2e-13 pfkB-like carbohydrate kinase family protein (.1) AT4G10260 62 / 8e-13 pfkB-like carbohydrate kinase family protein (.1) AT1G66430 62 / 1e-12 pfkB-like carbohydrate kinase family protein (.1) AT5G51830 60 / 7e-12 pfkB-like carbohydrate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009526 [exp] 81 / 2e-19 AT2G31390 553 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10013611 [exp] 75 / 2e-17 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10026865 [exp] 64 / 2e-13 AT3G59480 560 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10031668 [exp] 62 / 1e-12 AT5G51830 522 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10027401 [exp] 61 / 3e-12 AT5G51830 535 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009126 [exp] 61 / 3e-12 AT1G66430 582 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10040562 [exp] 59 / 2e-11 AT4G10260 539 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028517 [exp] 57 / 6e-11 AT1G66430 575 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G129700 [exp] 71 / 6e-16 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G029000 [exp] 70 / 2e-15 AT3G59480 568 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G126300 [exp] 64 / 3e-13 AT1G66430 519 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.004G089300 [exp] 63 / 5e-13 AT1G66430 527 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.012G132700 [exp] 63 / 6e-13 AT5G51830 460 / 1e-163 pfkB-like carbohydrate kinase family protein (.1) Potri.015G134900 [exp] 61 / 3e-12 AT5G51830 456 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Potri.019G063600 [exp] 59 / 1e-11 AT4G10260 550 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF00294 [flax] [poplar] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Lus10002101 pacid=23161682 polypeptide=Lus10002101 locus=Lus10002101.g ID=Lus10002101.BGIv1.0 annot-version=v1.0 ATGGCTGACCACATCTCTGGTCTATCTGACAACCACAACTGTGACAGACTTACGGCCCCTAAGATGGTCTCCAATGGTGGATCAGCAGACTCCTCCCTTA TTTTCAACATCGCTGAGATGCTGATCAACTTCATCCCTACCGCATCTGGTGTCTCCCTCGTCGAGGCTCAAGGCTTCCACAAGGCTACCGGTGGCACACC CGCAAACGTTGCAATCGCGATCTCCATACTAGTGGGAAACTCGTTGTCGGTAGGCTCGACGACAATGATTTCGGCCACATGCTGGCCAGGATCTTGA
AA sequence Show only first row Show all	>Lus10002101 pacid=23161682 polypeptide=Lus10002101 locus=Lus10002101.g ID=Lus10002101.BGIv1.0 annot-version=v1.0 MADHISGLSDNHNCDRLTAPKMVSNGGSADSSLIFNIAEMLINFIPTASGVSLVEAQGFHKATGGTPANVAIAISILVGNSLSVGSTTMISATCWPGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66430			pfkB-like carbohydrate kinase ...		Lus10002101 [exp]	0	1
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10032597 [exp]	1.0	0.8981
AT3G24220		ATNCED6, NCED6	nine-cis-epoxycarotenoid dioxy...		Lus10011750 [exp]	6.9	0.8614
					Lus10003285 [exp]	10.1	0.8345
					Lus10004996 [exp]	11.7	0.8345
					Lus10000363 [exp]	13.0	0.8345
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10022134 [exp]	14.3	0.8345
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10041558 [exp]	15.4	0.8345
AT1G18790		AtRKD1, RKD1	RWP-RK domain containing 1, RW...		Lus10034456 [exp]	16.5	0.8345
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10003300 [exp]	17.5	0.8345
AT2G37890			Mitochondrial substrate carrie...		Lus10006265 [exp]	18.4	0.8345

Compare expression of checked genes

Lus10002101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.