Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038520 [exp] 119 / 1e-34 ND / Lus10023285 [exp] 107 / 1e-29 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G081701 [exp] 58 / 4e-11 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002102 pacid=23161677 polypeptide=Lus10002102 locus=Lus10002102.g ID=Lus10002102.BGIv1.0 annot-version=v1.0 ATGCTATTCGGGAAGGAAATAGTGATGGAGCTGGCTTTCTACGATGCCTACGCCGGAGAATCCAAAGACGGCAGCTTGTCCGCCTCACCCGCAAGATTCT CAATGGGAGACGCCGTCTCTATGTGCGTGGTGGTCTCCAAACCGGTGGGATCCACCAAATGTTGCACCTCCTACGACGACTTGTCATACGCGAATTTAGC GTTGTGTAGATCCAGATTCTCGAGGTTGAAAGGCGTTGTTCATTTGCAATCGGAAGAACACAAGAGTTTCAAGGCTGATGCCCTGGACTGGAGTGGGATC TGA
AA sequence Show only first row Show all	>Lus10002102 pacid=23161677 polypeptide=Lus10002102 locus=Lus10002102.g ID=Lus10002102.BGIv1.0 annot-version=v1.0 MLFGKEIVMELAFYDAYAGESKDGSLSASPARFSMGDAVSMCVVVSKPVGSTKCCTSYDDLSYANLALCRSRFSRLKGVVHLQSEEHKSFKADALDWSGI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10002102 [exp]	0	1
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10016918 [exp]	24.8	0.6532
AT1G30800			Fasciclin-like arabinogalactan...		Lus10023390 [exp]	29.9	0.5827
AT3G49700		AtACS9, ACS9, E...	ETHYLENE OVERPRODUCING 3, 1-am...		Lus10007249 [exp]	33.9	0.6164
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10026419 [exp]	43.5	0.6381
					Lus10003442 [exp]	83.2	0.5641
AT5G06740			Concanavalin A-like lectin pro...		Lus10029290 [exp]	94.7	0.5421
AT4G30630			unknown protein		Lus10026889 [exp]	134.0	0.5559
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10008454 [exp]	135.1	0.5485
					Lus10019938 [exp]	186.6	0.5526
AT3G28470	MYB	TDF1, ATMYB35	DEFECTIVE IN MERISTEM DEVELOPM...		Lus10033119 [exp]	211.1	0.5489

Compare expression of checked genes

Lus10002102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.