Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16190 412 / 2e-145 Papain family cysteine protease (.1) AT2G21430 411 / 3e-145 Papain family cysteine protease (.1) AT4G39090 410 / 1e-144 EMB3005, RD19A, RD19 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) AT3G54940 340 / 4e-117 Papain family cysteine protease (.2) AT1G06260 176 / 5e-53 Cysteine proteinases superfamily protein (.1) AT3G19400 176 / 6e-53 Cysteine proteinases superfamily protein (.1.2) AT3G19390 177 / 1e-52 Granulin repeat cysteine protease family protein (.1) AT1G20850 171 / 3e-51 XCP2 xylem cysteine peptidase 2 (.1) AT4G35350 168 / 4e-50 XCP1 xylem cysteine peptidase 1 (.1.2) AT5G43060 171 / 5e-50 Granulin repeat cysteine protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024303 [exp] 536 / 0 AT4G39090 520 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10017487 [exp] 408 / 3e-144 AT4G39090 550 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10028797 [exp] 408 / 1e-143 AT4G39090 559 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10038684 [exp] 335 / 1e-114 AT3G54940 499 / 1e-177 Papain family cysteine protease (.2) Lus10037951 [exp] 309 / 1e-102 AT3G54940 451 / 6e-157 Papain family cysteine protease (.2) Lus10017489 [exp] 247 / 9e-83 AT4G39090 314 / 5e-108 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10030722 [exp] 174 / 4e-52 AT4G35350 511 / 0.0 xylem cysteine peptidase 1 (.1.2) Lus10013204 [exp] 173 / 7e-52 AT1G20850 509 / 0.0 xylem cysteine peptidase 2 (.1) Lus10027877 [exp] 169 / 4e-49 AT5G43060 597 / 0.0 Granulin repeat cysteine protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G028700 [exp] 447 / 2e-159 AT4G39090 536 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Potri.004G160300 [exp] 433 / 1e-153 AT4G39090 549 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Potri.005G234000 [exp] 432 / 3e-153 AT4G39090 501 / 9e-179 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Potri.009G121300 [exp] 428 / 1e-151 AT4G39090 571 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Potri.010G228400 [exp] 330 / 9e-113 AT3G54940 501 / 6e-179 Papain family cysteine protease (.2) Potri.011G066900 [exp] 174 / 6e-51 AT1G09850 366 / 7e-123 xylem bark cysteine peptidase 3 (.1) Potri.007G047600 [exp] 171 / 6e-51 AT5G43060 461 / 9e-162 Granulin repeat cysteine protease family protein (.1) Potri.005G256000 [exp] 169 / 2e-50 AT1G20850 539 / 0.0 xylem cysteine peptidase 2 (.1) Potri.004G207600 [exp] 167 / 7e-50 AT4G35350 543 / 0.0 xylem cysteine peptidase 1 (.1.2) Potri.014G024100 [exp] 169 / 2e-49 AT5G43060 646 / 0.0 Granulin repeat cysteine protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10002103 pacid=23161681 polypeptide=Lus10002103 locus=Lus10002103.g ID=Lus10002103.BGIv1.0 annot-version=v1.0 ATGGATCCCTCGGCCATCCACGGCGTCACCAAGTTTATGGACTTGACCCCGAAGGAGTTCCGCCGGCAGTACCTCGGGATGAGGAAGAAGATCCAGGTCC CGGCCGACGCTAACAAGGCCCCGGTCCTCCCCACCAACGATCTACCGACGGACTTCGACTGGCGCGATCATGGCGCTGTTGGAGTGGGCTCATGTGGATC TTGCTGGTCGTTCAGCGTGACTGGTGCTCTGGAAGGAGCTCATTTCCTTTCAACTGGAGAGCTTGTGAGCCTTAGCGAGCAGCAACTCGTGGATTGCGAC CACGAGTGCGATCCATCTCAATACGGAGCCTGTGACGCTGGCTGCAACGGCGGATTGATGACCACTGCATACCAGTACACACTGAAGGCCGGCGGAATTG AGCGAGAGGAGGATTATCCTTACACTGGAACTGACGGGGCTTGCAAATTCGACAAGAGCAAGATCGCTGCCTCAGTGGCCAACTTCAGCGTTGTTTCCAG CGATGAGGACCAAATTGCTGCTAATTTGGTTAAGAACGGCCCTCTGTCAATTGGCATCAACGCCGTCTTCATGCAAACATACATTGGAGGCGTTTCCTGC CCTTACATATGCCCCAAGAGTCAGGATCATGGCGTGCTGCTGGTGGGGTATGGAGCAGCTGGCTTCGCACCAATCCGGTTGAAAGAAAAGCCATTCTGGA TCATCAAGAACTCGTGGGGAGAGAACTGGGGAGAAGAAGGTTACTACAAGATATGCAAGGGAACTGGCAAGAACCTGTGTGGCATGGACACAATGGTTTC CTCTGTTGCTGCCTTGACCGTCGGTCATCAGTAA
AA sequence Show only first row Show all	>Lus10002103 pacid=23161681 polypeptide=Lus10002103 locus=Lus10002103.g ID=Lus10002103.BGIv1.0 annot-version=v1.0 MDPSAIHGVTKFMDLTPKEFRRQYLGMRKKIQVPADANKAPVLPTNDLPTDFDWRDHGAVGVGSCGSCWSFSVTGALEGAHFLSTGELVSLSEQQLVDCD HECDPSQYGACDAGCNGGLMTTAYQYTLKAGGIEREEDYPYTGTDGACKFDKSKIAASVANFSVVSSDEDQIAANLVKNGPLSIGINAVFMQTYIGGVSC PYICPKSQDHGVLLVGYGAAGFAPIRLKEKPFWIIKNSWGENWGEEGYYKICKGTGKNLCGMDTMVSSVAALTVGHQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10002103 [exp]	0	1
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10024303 [exp]	1.0	0.9318
AT1G21680			DPP6 N-terminal domain-like pr...		Lus10028545 [exp]	1.7	0.8892
AT2G30100			pentatricopeptide (PPR) repeat...		Lus10042274 [exp]	2.8	0.9150
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Lus10007646 [exp]	7.5	0.8800
AT1G02630			Nucleoside transporter family ...		Lus10030104 [exp]	9.2	0.8786
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Lus10018364 [exp]	11.5	0.8642
AT2G30100			pentatricopeptide (PPR) repeat...		Lus10026382 [exp]	11.7	0.8628
AT3G19660			unknown protein		Lus10033765 [exp]	11.8	0.8484
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Lus10031529 [exp]	14.9	0.8368
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10031153 [exp]	15.1	0.8384

Compare expression of checked genes

Lus10002103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.