Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39080 1226 / 0 VHA-A3 vacuolar proton ATPase A3 (.1) AT2G21410 1205 / 0 VHA-A2 vacuolar proton ATPase A2 (.1) AT2G28520 1026 / 0 VHA-A1 vacuolar proton ATPase A1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024304 [exp] 1563 / 0 AT4G39080 1288 / 0.0 vacuolar proton ATPase A3 (.1) Lus10017490 [exp] 1200 / 0 AT4G39080 1312 / 0.0 vacuolar proton ATPase A3 (.1) Lus10028796 [exp] 1079 / 0 AT4G39080 1193 / 0.0 vacuolar proton ATPase A3 (.1) Lus10036133 [exp] 1057 / 0 AT2G28520 1360 / 0.0 vacuolar proton ATPase A1 (.1) Lus10018129 [exp] 1056 / 0 AT2G28520 1367 / 0.0 vacuolar proton ATPase A1 (.1) Lus10017488 [exp] 137 / 8e-38 AT4G39080 145 / 2e-41 vacuolar proton ATPase A3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G028600 [exp] 1285 / 0 AT2G21410 1187 / 0.0 vacuolar proton ATPase A2 (.1) Potri.005G234100 [exp] 1274 / 0 AT2G21410 1194 / 0.0 vacuolar proton ATPase A2 (.1) Potri.009G121400 [exp] 1216 / 0 AT4G39080 1300 / 0.0 vacuolar proton ATPase A3 (.1) Potri.004G160400 [exp] 1192 / 0 AT4G39080 1245 / 0.0 vacuolar proton ATPase A3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01496 [flax] [poplar] V_ATPase_I V-type ATPase 116kDa subunit family
Representative CDS sequence Show only first row Show all	>Lus10002104 pacid=23161680 polypeptide=Lus10002104 locus=Lus10002104.g ID=Lus10002104.BGIv1.0 annot-version=v1.0 ATGGCTGAGGGAATGGATCTGCTGCGGTCAGAACCAATGCAGTTGGTTCAGCTCATCGTTCCAATGGAATCAGCTCATCGCACTATCTCGTATCTCGGAG ATCTTGGCCTCTTCCAATTCAAAGATCTTAATCCTGAAAAGAGCCCGTTCCAGAGAACCTATGCTGGTCAAATCAAAAGATGTGCAGAAATGGCACGTAA GCTACGATTCTTCAAGGATCATATGAGGAAGGCTGGCTTGTCACCGTCAACAAGGTCCATAAGCACCGATACTGATCTTGACAGTTTGGAGGTGAAACTT GGCGAACTAGAAGCTGAGTTAATGGAAATCAATGCTAATGATGAAAAGTTGCAGCACACTTACAATGAACTGTTAGAGTACAAGCTTGTTCTGCAGAAGG CTGGTGAATTTTTTAATTCAGCTCAAAGCACTGCTGCTGCTCATCAGAGAGAATTTGAAGCACATAATGGCGGAGAAGGGTCTATCGACAGTCCATTATT ATTGGAGCAGGAAATGACAACAGACCCATCAAAGCACGTTAAATTGGGGTTTGTTAGTGGTCTTGTTCCTCGAGATAAAGCTATGGCTTTCGAGAGACTT CTTTTCCGTGCAACCAGAGGCAATGTATTTCTAAAGCAATCAGTGGCATTTAATCCGGTCGTTGATCCAGGATCAGGGGAGAAGGTTGAGAAAAACGTAT TCATAGTTTTCTACTCTGGAGAACGCGCCAAAAACAAAATTCTGAAAATTTGTGAAGCATTTGGAGCTAATCGCTACCCATTCACAGAAGACCTCGGTAA ACAATTTCAAATGATCAAAGAGGTTAGGAAGGAAAAATCTGTATATCACACATTAAACATGCTGAGTATAGATGTGACAAAGAAGTGCCTTGTTGCTGAA GGTTGGTGCCCTGTTTATGCAACCCTCCAGATCCAGGATACACTGCAGCGCGCTACCCTGGACAGCAATTCACAAATAGGGGCCATCATCCAGGTTTTGC AGACAAAGGCAGCACCGCCTACCTATTTCCGTACAAATAAATTTACATCCGCATTTCAAGAAATCGTTGATGCTTATGGGGTTGCAAAGTACCGAGAAGT GAATCCTGGTGTTTTTACAATCGTAACATTCCCATTCCTTTTTGCTGTGATGTTTGGTGACTGGGGTCACGGTATTTGCTTATTACTGGCTACACTGTTT TTGATTGCAATGGAAAAGAAGTATTCGAACCAGAAACTCGGCGACATCCTGGAAATGACATTTGGTGGCCGATATGTTATCATGATGATGTCGATCTTCT CAATATTCACAGGATTGATATATAATGAATTCTTTTCTGTCCCTTATGAACTTTTTGGTCCATCTGCCTACTCTTGCCGTGACTTATCTTGCAGGGATGC ATATACTGCTGGTTTAGTTAAGGTGCGCCCCACTTATCCATTTGGTGTGGATCCCAAGTGGCATGGTACCAGGAGCGAGTTACCTTTTCTCAACTCATTA AAGATGAAGATGTCAATTTTGCTGGGAGTAGCTCAGATGAATCTTGGTATTATATTGAGCTACTTCAATGCAAAGTTCTTTGCCAATAACCTGAATGTCC GATATCAGTTTATACCGCAGATGATTTTCCTAAACAGCTTATTTGGCTACCTGTCGCTCCTGATTATCGTGAAATGGTGCACGGGCTCAAAAGCTGATCT GTACCATGTGATGATATATATGTTCCTGAGCCCTATGGATGATCTAGGAGAAAATCAACTCTTTTTTGGCCAGAAATATTTGCAGATCCTACTGCTTGTA TTAGCCTTTGTTGCTGTGCCATGGATGTTGTTTCCTAAGCCGTTTCTTCTGAAGAAGCAACACGAGGAAAGGCACCAAGGTCAGTCATATGCCCTACTGG ATAACGCGGATGACAACCTTGAAGTGGAGCCTCATCAGAAATCTTCCCACGGCAATGAAGAGTTTGAATTCAGTGAGGTTTTTGTTCATCAGCTTATACA CACCATAGAGTTTGTGCTCGGAGCAGTATCTAACACGGCATCATACTTGCGTCTCTGGGCTCTCAGTCTAGCTCACTCTGAGCTATCAAGTGTTTTCTAT GACAAGGTTCTGCTTCTGGCTTGGGGGTTCAACAATACTGTCATTCTTATCATCGGAATCATCGTCTTTGTATGTGCAACTGTTGGTGTATTACTCGTCA TGGAAACCCTAAGTGCATTCCTCCACGCTCTGAGGCTTCATTGGGTTGAATTCCAGAACAAGTTCTACGAGGGAGATGGGTACAAATTTGCCCCCTTCTC GTTTGCTCTGCTCACTGAAGACGACGAAGGAGCCTAA
AA sequence Show only first row Show all	>Lus10002104 pacid=23161680 polypeptide=Lus10002104 locus=Lus10002104.g ID=Lus10002104.BGIv1.0 annot-version=v1.0 MAEGMDLLRSEPMQLVQLIVPMESAHRTISYLGDLGLFQFKDLNPEKSPFQRTYAGQIKRCAEMARKLRFFKDHMRKAGLSPSTRSISTDTDLDSLEVKL GELEAELMEINANDEKLQHTYNELLEYKLVLQKAGEFFNSAQSTAAAHQREFEAHNGGEGSIDSPLLLEQEMTTDPSKHVKLGFVSGLVPRDKAMAFERL LFRATRGNVFLKQSVAFNPVVDPGSGEKVEKNVFIVFYSGERAKNKILKICEAFGANRYPFTEDLGKQFQMIKEVRKEKSVYHTLNMLSIDVTKKCLVAE GWCPVYATLQIQDTLQRATLDSNSQIGAIIQVLQTKAAPPTYFRTNKFTSAFQEIVDAYGVAKYREVNPGVFTIVTFPFLFAVMFGDWGHGICLLLATLF LIAMEKKYSNQKLGDILEMTFGGRYVIMMMSIFSIFTGLIYNEFFSVPYELFGPSAYSCRDLSCRDAYTAGLVKVRPTYPFGVDPKWHGTRSELPFLNSL KMKMSILLGVAQMNLGIILSYFNAKFFANNLNVRYQFIPQMIFLNSLFGYLSLLIIVKWCTGSKADLYHVMIYMFLSPMDDLGENQLFFGQKYLQILLLV LAFVAVPWMLFPKPFLLKKQHEERHQGQSYALLDNADDNLEVEPHQKSSHGNEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFY DKVLLLAWGFNNTVILIIGIIVFVCATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFAPFSFALLTEDDEGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10002104 [exp]	0	1
AT2G27900			unknown protein		Lus10009613 [exp]	1.0	0.9581
AT5G28350			Quinoprotein amine dehydrogena...		Lus10018824 [exp]	2.0	0.9520
AT4G32120			Galactosyltransferase family p...		Lus10001954 [exp]	2.0	0.9282
AT2G43240			Nucleotide-sugar transporter f...		Lus10027009 [exp]	2.2	0.9278
AT2G28520		VHA-A1	vacuolar proton ATPase A1 (.1)		Lus10036133 [exp]	5.2	0.9297
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10033368 [exp]	8.3	0.8725
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10010173 [exp]	9.9	0.8914
AT3G06440			Galactosyltransferase family p...		Lus10032650 [exp]	12.4	0.8651
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10022790 [exp]	12.5	0.8604
AT4G11800			Calcineurin-like metallo-phosp...		Lus10042668 [exp]	12.6	0.8650

Compare expression of checked genes

Lus10002104 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.