Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43630 71 / 4e-14 unknown protein AT3G59640 68 / 2e-13 glycine-rich protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013892 [exp] 332 / 2e-115 AT2G43630 107 / 9e-28 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G123800 [exp] 92 / 8e-22 AT2G43630 194 / 2e-61 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002105 pacid=23166346 polypeptide=Lus10002105 locus=Lus10002105.g ID=Lus10002105.BGIv1.0 annot-version=v1.0 ATGTCGGTTTCAAGCAAAGTCGCCGTTCCCCAACCCTACGCCTTTTTCCGCTCCCCATCTCTTCCGCTTCGACGACTTCCTCCCTCTTCCTTTTCATTTG TCCCTGGGAATCAGGAAAGATCGATTGTTTCTTTGAAATTCGCGTATAAACTCTTGTTCGCACGCGGCAGATTCGCCTCCAAGAACTCCACAGCCTCACC ATCACCTGTGGTTTGTTGTTTGCTTGCTGGAGAAGGCAAACCTGATCGAGACAATCTGGGATTTCGATGGGAATCTTTTGAGAGAGCTACGGATGGATTC AAGCCGGAAGGACTCAAGCCGAAACAGTCGGTAGAAGAGATGTTGCAAGAGCAAATTAGAAGAAGGCGATTCTCTGCTGGAGGCAGTGGCCAAAAACTTC CAGGAGGCGGCGGTGGTCAAGGTGGCGGCCGCGGTGGTGGTCGTGATGATTCCGGAGGAGGAGTAGGAGATGAAGGCTCTTTTGGATTCTCTGGTGAAGC TCTGCAAGTGATCTTAGCTACCATTGGTTTCATCTTTATGTATATTTACGTGATCCACGGAATGGAGATTAATAGGCTGGGAAAAGACTGCGTGAAGTAT CTCCGGACTGGTACTAAAAGTGCTCGCTTGAAGAAATTCATGGGGAAGTGTGAGACTGTCCTTCTGTTGCTGTTTGTTATGATAGTGTATTACAAGTGTA GATTCGATGAAGCTGCAAGTCGGTTCAGTGGCATAACCAAGTACAAGCACAGGTTGAGGTTGCACCAGGGATCACACGCGGAAGAGTAG
AA sequence Show only first row Show all	>Lus10002105 pacid=23166346 polypeptide=Lus10002105 locus=Lus10002105.g ID=Lus10002105.BGIv1.0 annot-version=v1.0 MSVSSKVAVPQPYAFFRSPSLPLRRLPPSSFSFVPGNQERSIVSLKFAYKLLFARGRFASKNSTASPSPVVCCLLAGEGKPDRDNLGFRWESFERATDGF KPEGLKPKQSVEEMLQEQIRRRRFSAGGSGQKLPGGGGGQGGGRGGGRDDSGGGVGDEGSFGFSGEALQVILATIGFIFMYIYVIHGMEINRLGKDCVKY LRTGTKSARLKKFMGKCETVLLLLFVMIVYYKCRFDEAASRFSGITKYKHRLRLHQGSHAEE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43630			unknown protein		Lus10002105 [exp]	0	1
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10002978 [exp]	3.6	0.9587
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10019929 [exp]	5.8	0.9566
AT3G05320			O-fucosyltransferase family pr...		Lus10018291 [exp]	7.2	0.8937
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10026499 [exp]	7.5	0.9536
AT3G13130			unknown protein		Lus10016611 [exp]	7.7	0.9517
AT4G16380			Heavy metal transport/detoxifi...		Lus10039073 [exp]	9.1	0.8788
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10031281 [exp]	11.2	0.9505
AT1G32770	NAC	NST3, ANAC012, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10001664 [exp]	12.2	0.9492
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10034289 [exp]	13.0	0.9463
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Lus10002559 [exp]	15.3	0.9386

Compare expression of checked genes

Lus10002105 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.