Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02860 998 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G18940 530 / 1e-177 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74850 290 / 1e-85 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT3G06920 262 / 1e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G31400 261 / 6e-75 GUN1 genomes uncoupled 1 (.1) AT5G01110 248 / 2e-71 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G31850 248 / 2e-69 PGR3 proton gradient regulation 3 (.1) AT5G61990 245 / 7e-69 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55840 243 / 1e-67 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 234 / 4e-67 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013894 [exp] 1463 / 0 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020002 [exp] 521 / 2e-173 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015530 [exp] 518 / 3e-172 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006962 [exp] 496 / 2e-164 AT2G18940 976 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025473 [exp] 484 / 1e-159 AT2G18940 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 273 / 2e-79 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033127 [exp] 269 / 6e-78 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10022290 [exp] 247 / 4e-71 AT2G31400 911 / 0.0 genomes uncoupled 1 (.1) Lus10026206 [exp] 253 / 5e-71 AT5G14770 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G297300 [exp] 1010 / 0 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G092100 [exp] 1001 / 0 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G166200 [exp] 550 / 0 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G069100 [exp] 264 / 4e-76 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.015G105400 [exp] 265 / 2e-75 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 258 / 3e-75 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G276500 [exp] 256 / 2e-74 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G014100 [exp] 254 / 2e-72 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G123900 [exp] 257 / 6e-72 AT3G18110 1974 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G242500 [exp] 246 / 6e-72 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10002107 pacid=23166354 polypeptide=Lus10002107 locus=Lus10002107.g ID=Lus10002107.BGIv1.0 annot-version=v1.0 ATGCTAGTGGAGCCAGATGGAAAATCACGAGAAGCTCATTTAAGACGAGCAAATACTTCTTCCAATTCGAATTCCAGGAGCAGGACACGGCTTGGCAAGC ATCGTGACCCCAGCCGGGGGAAGCCATGGGTACACCACCGGCTCTCTCCACTAGGTGACACAGTTCTTAAGTCATTGAACCACCCATCACTCGATGAATC TGAAATTGAAGGAATCTTGAATCGGTTGTTTCAGTCTCATACACATGGATCTAGTTTGAGTAGTAGTGGTGATAATAGAGGTTTATCTGATGATATTCTG GGGATATTGAAATTTTTGGGGTCCCAGGAGAAATACGACCTGGCTGCGAATGTGTTTGAGTGGGTGAGAAGCAGGAAAGAATATCAATTGGTTCTCAATA ACGCCATGGTTTCTTCACTTATTAAAATGTTTGGTAAAGCAGGGAAAGTTTCTGCAGCAGCTGCTATCTTCACTAGTTTAGATAAAGACGGCTTTGCTCT TGATGTTTACGCTTACACATCTTTGGTTACTGTTTATGCTCGTAACGGGAAGTATAAGGAGGCTTTGATGTTGTTTGATGAGATGCTGGAAGCAGGTATC AGGCCCACACTGATAAGTTATAATATCATTCTTAATGCATATGGCAAAGTGGGTATGCCTTGGAGTAAGACTATAGCTATGTTGGAAAAAATGAAAAGTG ATGGGATTGCTCCTGATGATTACACATACAACACACTCATCTCTTGTTGCCGTCAAGGAGGTTTACTTGATAAAGCTATTGAGGTTTTTGAAGACATGAA ATCTGCTGGCTTTTCTCCTGATAAGGTTACTTATAATGCCTTATTGGATGTTTTCGGGAAGTCTAGACGACCAAAGGAGGCTATGAAGGTATTGTGGGAA ATGGAGACTAAAGGGTTTTCTCCTAGCATTGTGACTTACAATTCGTTGATATCTGCTTATGCAGTTGATGGTTTGTTGGATGAAGCTATGGAACTTAAAG CACAAATGGAGAGGAAGGGAATTAAGCCAGACGTGTATACATATAGCTCTCTATTCTCGGGGTTCGAGATGGCCGGGAAAGATGAGCATGCGATGAGGGT GTTTGAGGAAATGAGGGATGCAGGGTGCAAACCAAACACTTGTACTTTCAATGCACTCATCAAAATGCACGGAAACCGGGGAAAGTTTACTGAAATGATG AAGGTTTTCGAAGAGATGGAAATCTGCAATTGTGCACCGGATATCGTTACTTGGAATACACTTCTTACCGTGTTCGGGAACAACGGGTTGGACTCTGAAG TCTCGGGAGTGTTCAAGGAAATGAAGAGAGCTGGGTTTGTCCCCGAGAGGGACACTTATAATTCGTTAATTAGTGCGTTCAGTAAATGTGGGGCTTATGA ACAAGCCATGATCGTTTACAAGAGAATGCTCGAAGCCGGGGTTACTCCTAACCTATCCTCCTACAATGCTGTCTTGGCAGCACTCGCCAGGGGTGGACTT TGGGATCAATCGGAGAAGATTATTTCCGAAATGAAGGAGAGGGGTTGCAAACCGAATGAATTTACATACAGTTCTTTGCTTCATGCTTATGCCAACGGGA AAGAGATTGATCGGATGCATTCTCTCGCGGAGCAGATATATTCGGGAGTAATCGAGCCTCATGCTCTTCTCTTGAAGAGCCTTGTTCTGGTTAATAGCAA AGCCGATCAATTAGTGGAAACTGAACATGCATTCTCAGAGCTTGTAAATAGAGGATTTTCACCGAGCACCAATACATTGAATGCTATGATTTCAGTTTAC GGGAGGAGACAGATGGTTGCAAAAGCTGAGGAGATGTTGACCTTCATGAACAAACACGGGTACGTTGCGAATTTATCAACATACAATACTGTAATGTACA TGCACAGCCGCTCAGGAAGTTACGAGAAGTCGGAAGAAGTATTGAGAGAGATTATTAAGAAGGGACTGAAGCCTGATCGAATCTCGTACAACACGGTTAT ATTTGCCTACTGCCGTAATGGTATGATGAATGAAGCTTCGCGGATACTTTCGGAAATGAAGGGTGCTGGGGTTGTGCCTGATGCAGTCACGTATAACACT TTTATTTCGAGCTATGCAGCCGATTCAATGTTTGAGAGCGCCATTAGCGTTTTGCAGCATATGGTCAAGCAGGGCTGCCAGCCAAACGACAGTACTTACA ATGCAATTGTTGATGGATACTGTAAACACGGCCGCCACTCCGATGCCGCCATGTTCATTAGCAATCTTCAGAAACTCGATCCGCGTGTTACTCTGGAAGA AGAGGGAAGGCTATCACAACGTGTATCGAAGTTGTGGCCGTAA
AA sequence Show only first row Show all	>Lus10002107 pacid=23166354 polypeptide=Lus10002107 locus=Lus10002107.g ID=Lus10002107.BGIv1.0 annot-version=v1.0 MLVEPDGKSREAHLRRANTSSNSNSRSRTRLGKHRDPSRGKPWVHHRLSPLGDTVLKSLNHPSLDESEIEGILNRLFQSHTHGSSLSSSGDNRGLSDDIL GILKFLGSQEKYDLAANVFEWVRSRKEYQLVLNNAMVSSLIKMFGKAGKVSAAAAIFTSLDKDGFALDVYAYTSLVTVYARNGKYKEALMLFDEMLEAGI RPTLISYNIILNAYGKVGMPWSKTIAMLEKMKSDGIAPDDYTYNTLISCCRQGGLLDKAIEVFEDMKSAGFSPDKVTYNALLDVFGKSRRPKEAMKVLWE METKGFSPSIVTYNSLISAYAVDGLLDEAMELKAQMERKGIKPDVYTYSSLFSGFEMAGKDEHAMRVFEEMRDAGCKPNTCTFNALIKMHGNRGKFTEMM KVFEEMEICNCAPDIVTWNTLLTVFGNNGLDSEVSGVFKEMKRAGFVPERDTYNSLISAFSKCGAYEQAMIVYKRMLEAGVTPNLSSYNAVLAALARGGL WDQSEKIISEMKERGCKPNEFTYSSLLHAYANGKEIDRMHSLAEQIYSGVIEPHALLLKSLVLVNSKADQLVETEHAFSELVNRGFSPSTNTLNAMISVY GRRQMVAKAEEMLTFMNKHGYVANLSTYNTVMYMHSRSGSYEKSEEVLREIIKKGLKPDRISYNTVIFAYCRNGMMNEASRILSEMKGAGVVPDAVTYNT FISSYAADSMFESAISVLQHMVKQGCQPNDSTYNAIVDGYCKHGRHSDAAMFISNLQKLDPRVTLEEEGRLSQRVSKLWP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02860			Pentatricopeptide repeat (PPR)...		Lus10002107 [exp]	0	1
AT5G02860			Pentatricopeptide repeat (PPR)...		Lus10013894 [exp]	1.0	0.9703
AT5G04710			Zn-dependent exopeptidases sup...		Lus10034142 [exp]	3.0	0.9305
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10008969 [exp]	3.2	0.9176
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10013636 [exp]	5.1	0.9430
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10001332 [exp]	7.7	0.9255
AT5G48040			Ubiquitin carboxyl-terminal hy...		Lus10012201 [exp]	9.8	0.8808
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10001331 [exp]	12.0	0.9131
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10038400 [exp]	12.1	0.9073
AT5G42390		SPP	stromal processing peptidase, ...		Lus10041263 [exp]	13.6	0.8555
AT3G48110		EDD1	EMBRYO-DEFECTIVE-DEVELOPMENT 1...		Lus10042915 [exp]	13.6	0.9056

Compare expression of checked genes

Lus10002107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.