Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26710 353 / 1e-116 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT3G14610 342 / 3e-112 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT3G14680 334 / 4e-109 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT3G14630 332 / 1e-108 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT2G46960 324 / 2e-105 CYP709B1 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) AT3G14660 324 / 3e-105 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT2G46950 322 / 9e-104 CYP709B2 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) AT3G14690 319 / 2e-103 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT3G14640 318 / 6e-103 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT4G27710 317 / 9e-103 CYP709B3 "cytochrome P450, family 709, subfamily B, polypeptide 3", cytochrome P450, family 709, subfamily B, polypeptide 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019184 [exp] 541 / 0 AT3G14680 369 / 2e-122 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) Lus10017775 [exp] 524 / 0 AT3G14630 359 / 2e-117 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) Lus10026085 [exp] 521 / 0 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10026084 [exp] 504 / 1e-175 AT2G26710 375 / 6e-125 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10019177 [exp] 492 / 5e-171 AT2G26710 373 / 4e-124 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036818 [exp] 492 / 8e-171 AT2G26710 369 / 2e-122 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036816 [exp] 482 / 6e-167 AT3G14620 339 / 8e-111 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Lus10036817 [exp] 483 / 3e-160 AT2G26710 382 / 3e-121 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10019176 [exp] 464 / 5e-160 AT3G14620 342 / 8e-112 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G139600 [exp] 514 / 1e-179 AT2G26710 395 / 6e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139400 [exp] 500 / 4e-174 AT2G26710 402 / 2e-135 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139200 [exp] 482 / 3e-167 AT2G26710 369 / 6e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G014407 [exp] 481 / 2e-166 AT2G26710 389 / 3e-130 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139300 [exp] 477 / 4e-165 AT2G26710 372 / 1e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G071200 [exp] 472 / 4e-163 AT2G26710 346 / 9e-114 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.006G154500 [exp] 351 / 1e-115 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.018G070900 [exp] 346 / 8e-114 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.011G098800 [exp] 330 / 8e-108 AT3G14690 640 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101500 [exp] 330 / 2e-107 AT3G14690 609 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10002108 pacid=23166339 polypeptide=Lus10002108 locus=Lus10002108.g ID=Lus10002108.BGIv1.0 annot-version=v1.0 ATGGCGTTTCTTTATAAGATGCTAAGGATGCCGTTGCAGATACAGAGGAAGCTGAACTCTCAAGGGATCAACGGACCTTCTTACAACTTCATGCGTGGTA ACAATCTAGAGATCCTGAAAATGAGGCAACAAGTCCGAGCAAGTGGGCCTATGAACGATCTGTCACACGCTGTGAATCCCAGAATACAGCCTCATATCTC CTCCTGGATGAACATCTATGGTAAGGCTTTTGTGTTCTGGGTTGGACCTCAAGCAAACTTGGTTGTGTCAGAGCTGGATCTGATAAAGAAGTTGTTGCAC AACAAAGAAAAAGTTTACGGCAAAGTAGAGACATCATTCTACATCAGGAAGTTACTGGGAGATGGGCTTGCGTCCACTTCCGATGGAACAAAATGGCATC ACATGAGAAAATTAGCCCATTTCGCTTTCCATGGAGAAAGCTTGAAAAACATGATTCCAGCAATGGTTTGGAGCGGAGAGAAGATGGTAGAGAAATGGAG GAGCTCGATAGGGAAAGAGATAGACGTGCATGCTGAATTCAAGCTGTTGACATCTGAAGTCATCTCCAGGTCTGCTTTTGGGACTAATTACAATCAAGGA CAGCTCTTCTCTCAGATGTTGGGTGGCTTGGCCAACTTGATCAAGGAAGACCATCAATTCAAGTTCATACCCCCAGCACTAATCAGCAAGATGTACAGAA CAAGAGATGAGATTGAAGCAGAGAGGCTGCAGCGCGGGATAAAGGATTTGGTCATTGGAATGGTTAAGGAACGTGAAGATGCTGCAGCATCAACTAAGGA GGTAGCAGTGAAGGCCGGTTACGAGTATGGGACGGATTTTCTGGGATTACTGGTGAAGTCATACCACGATGAGTCGAAGGAGGTTTCGGTGGACAACGTA ATTGATGAGTGCAAGACATTCTACGTTGCGGGTCAACACCCAGCCAACTTCTTGCTTTCATGGGCTACCTTCCTTTTGTCAGTTCATACCGATTGGCAGG AAGAGGCCAGAAATGAGGTTGTTTCTCGGTTTGGTCGCGACGGAATTCCTGACGCAGATGGCATTTCGAAACTCAAAGTTTTGAGCATGATAATCAACGA GACGCTGCGTCTGTATCCTCCGGTAGTTCAACTAAACCGAAAAGTTGGCAGGGTGACTCAGCTGGGACACCTTAGTCTCCCCGAGGGTGTGAATTTGGTG GTTCCGATTCTAGCCATTCACCATGATCCAGCAATATGGGGGGAGGATGTCGAACTTTTCAAACCAGAGAGATTTAAGGATGGGATTTCAGATGCTACCA ACCAAAATCCAACAGCATTCATGCCGTTCGGGTTGGGTCCACGAAACTGCGTTGGATCCAACTTTGTCATCGTAGAAGCCAAGATAGTGCTTTCTATGAT TCTTCAGCGGTTTTCCTTCACTCTTTCTTCAACCTACATTCACTCCATATATCCAGCCATGAGCATGGGGCCTCAACATGGAGTTCAAGTTATTCTCGAG GCTATTTGA
AA sequence Show only first row Show all	>Lus10002108 pacid=23166339 polypeptide=Lus10002108 locus=Lus10002108.g ID=Lus10002108.BGIv1.0 annot-version=v1.0 MAFLYKMLRMPLQIQRKLNSQGINGPSYNFMRGNNLEILKMRQQVRASGPMNDLSHAVNPRIQPHISSWMNIYGKAFVFWVGPQANLVVSELDLIKKLLH NKEKVYGKVETSFYIRKLLGDGLASTSDGTKWHHMRKLAHFAFHGESLKNMIPAMVWSGEKMVEKWRSSIGKEIDVHAEFKLLTSEVISRSAFGTNYNQG QLFSQMLGGLANLIKEDHQFKFIPPALISKMYRTRDEIEAERLQRGIKDLVIGMVKEREDAAASTKEVAVKAGYEYGTDFLGLLVKSYHDESKEVSVDNV IDECKTFYVAGQHPANFLLSWATFLLSVHTDWQEEARNEVVSRFGRDGIPDADGISKLKVLSMIINETLRLYPPVVQLNRKVGRVTQLGHLSLPEGVNLV VPILAIHHDPAIWGEDVELFKPERFKDGISDATNQNPTAFMPFGLGPRNCVGSNFVIVEAKIVLSMILQRFSFTLSSTYIHSIYPAMSMGPQHGVQVILE AI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10002108 [exp]	0	1
AT1G27510			Protein of unknown function (D...		Lus10027696 [exp]	3.6	0.8611
AT2G25840		OVA4	ovule abortion 4, Nucleotidyly...		Lus10005494 [exp]	5.3	0.8581
AT3G09250			Nuclear transport factor 2 (NT...		Lus10022605 [exp]	7.5	0.8492
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10027532 [exp]	10.8	0.8521
AT3G47570			Leucine-rich repeat protein ki...		Lus10004827 [exp]	14.7	0.8266
AT2G46910			Plastid-lipid associated prote...		Lus10000058 [exp]	14.7	0.7542
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10038385 [exp]	15.5	0.8475
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10010068 [exp]	15.8	0.8489
AT1G78915			Tetratricopeptide repeat (TPR)...		Lus10034802 [exp]	16.9	0.8106
AT1G27150			Tetratricopeptide repeat (TPR)...		Lus10036690 [exp]	17.7	0.8162

Compare expression of checked genes

Lus10002108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.