Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27490 302 / 1e-102 ATCOAE dephospho-CoA kinase family (.1.2) AT3G14630 102 / 1e-23 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT3G14610 99 / 1e-22 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT2G46960 97 / 3e-22 CYP709B1 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) AT3G14660 96 / 1e-21 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT2G46950 95 / 3e-21 CYP709B2 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) AT3G14690 95 / 4e-21 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT3G14680 95 / 4e-21 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT4G27710 94 / 8e-21 CYP709B3 "cytochrome P450, family 709, subfamily B, polypeptide 3", cytochrome P450, family 709, subfamily B, polypeptide 3 (.1) AT2G26710 93 / 2e-20 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013897 [exp] 422 / 6e-150 AT2G27490 323 / 4e-113 dephospho-CoA kinase family (.1.2) Lus10002108 [exp] 194 / 4e-57 AT2G26710 353 / 1e-116 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10026084 [exp] 131 / 8e-34 AT2G26710 375 / 6e-125 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10026085 [exp] 129 / 5e-33 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10017775 [exp] 127 / 3e-32 AT3G14630 359 / 2e-117 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) Lus10019184 [exp] 125 / 1e-31 AT3G14680 369 / 2e-122 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) Lus10002311 [exp] 122 / 3e-31 AT3G14630 317 / 8e-104 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) Lus10019178 [exp] 117 / 8e-31 AT3G14630 164 / 8e-48 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) Lus10019177 [exp] 122 / 1e-30 AT2G26710 373 / 4e-124 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G206900 [exp] 364 / 3e-127 AT2G27490 350 / 1e-123 dephospho-CoA kinase family (.1.2) Potri.008G053601 [exp] 217 / 2e-70 AT2G27490 219 / 3e-73 dephospho-CoA kinase family (.1.2) Potri.010G139600 [exp] 134 / 8e-35 AT2G26710 395 / 6e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139200 [exp] 114 / 6e-28 AT2G26710 369 / 6e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G014407 [exp] 108 / 6e-26 AT2G26710 389 / 3e-130 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139400 [exp] 107 / 1e-25 AT2G26710 402 / 2e-135 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139300 [exp] 107 / 2e-25 AT2G26710 372 / 1e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G071200 [exp] 102 / 1e-23 AT2G26710 346 / 9e-114 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.011G098800 [exp] 101 / 2e-23 AT3G14690 640 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G099200 [exp] 98 / 9e-23 AT3G14660 466 / 3e-163 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450 CL0023 [flax] [poplar] P-loop_NTPase PF01121 [flax] [poplar] CoaE Dephospho-CoA kinase
Representative CDS sequence Show only first row Show all	>Lus10002109 pacid=23166341 polypeptide=Lus10002109 locus=Lus10002109.g ID=Lus10002109.BGIv1.0 annot-version=v1.0 ATGGTCGTGAAAACCGGTTATCAGTATGGAACCGATTTTCTAGGATTACTCGTCAAATCATACCACGATGAGTTGAAGGAGGTTTCAGTGAACCGCGTAG TTGACGAGTGCAAGACATTCTACCATGCAGCTCAATACCCGACCAACTACTTTCTCTCGTGGGCCATCTTCTTATTCTCGACCCATACCCACTGGCAAGA AGAGGCTAGAAAGGAGGTCGTTTCACGATTCGGTCATGGCGGAATTCCTGATGCATATGGAATCTCTAAGTTCAAAGTTCTGACTATGATAATCAACGAG GCGTTGCGCTTGTACCCTCCAGTAGTCCAACTAACCCGAAGAGTTGGCAGGTTTCCCAAGTCAATCGGGGTTGGTGAATGGTATGGTGGAGCAATGAGAA TAGTGGGATTGACGGGAGGAATCTCGTCGGGGAAAAGCACCGTCTTCAATCTTTTCAAGTCCCATTCTATTCCCGTCGTTGACGCCGACGTCGTTGCTCG GGATGTTCTGAAGAAAGGGACAGGTGGATATAAAAGAGTTGTTACAGCATTTGGGGAGGATATTTTGCAAGCAAATGGGGAAGTTGATAGGGCTAAACTT GGCCAGATTGTTTTCTCTGATCCAGGAAAGCGCCAACTCCTTAACAGGTTACTGGCACCCTTCATATCCTCTGGGATATTTTATGAAGTTCTGAAGCTAT GGCTGAAAGGTCATAAGGTTATTGTCCTCGACGTTCCTTTGTTATTCGAGGCCAAGATGGACAAGTGGACGAACCCTGTTATCGTAGTATGGGTGGATCC TAACACGCAGCTGCATCGCCTTATGGTAAGAGATGGAAGTAACGAGGAGGATGCCCGAAATCGGATAAACGCTCAGATGTCACTGGATCTGAAGAGGTCC AAGGCTGACATCGTCATCGAGAACACTGGTTCGTTAGAGGAGTTGGAAGAAAAATTCCCGACGGTTTTAGCTCGAGTCACGAAGCCTTTAACTTGGACCG AGTTCTGGCTTTCAAGACAGGGAGCTTTCATATCTCTGTTTTCCATTGTTGTTGGAGTAGTTGCTGCCAAAAATCTCTACAAGACTTCATAA
AA sequence Show only first row Show all	>Lus10002109 pacid=23166341 polypeptide=Lus10002109 locus=Lus10002109.g ID=Lus10002109.BGIv1.0 annot-version=v1.0 MVVKTGYQYGTDFLGLLVKSYHDELKEVSVNRVVDECKTFYHAAQYPTNYFLSWAIFLFSTHTHWQEEARKEVVSRFGHGGIPDAYGISKFKVLTMIINE ALRLYPPVVQLTRRVGRFPKSIGVGEWYGGAMRIVGLTGGISSGKSTVFNLFKSHSIPVVDADVVARDVLKKGTGGYKRVVTAFGEDILQANGEVDRAKL GQIVFSDPGKRQLLNRLLAPFISSGIFYEVLKLWLKGHKVIVLDVPLLFEAKMDKWTNPVIVVWVDPNTQLHRLMVRDGSNEEDARNRINAQMSLDLKRS KADIVIENTGSLEELEEKFPTVLARVTKPLTWTEFWLSRQGAFISLFSIVVGVVAAKNLYKTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27490		ATCOAE	dephospho-CoA kinase family (....		Lus10002109 [exp]	0	1
AT1G21780			BTB/POZ domain-containing prot...		Lus10029677 [exp]	2.2	0.9057
AT5G27720		LSM4, EMB1644	SM-like protein 4, embryo defe...		Lus10004221 [exp]	3.2	0.8975
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10032705 [exp]	4.2	0.9052
AT3G11810			unknown protein		Lus10036797 [exp]	4.5	0.8985
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10002410 [exp]	5.8	0.8730
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Lus10029219 [exp]	5.9	0.8932
AT3G11780			MD-2-related lipid recognition...		Lus10013366 [exp]	7.3	0.8936
AT4G14600			Target SNARE coiled-coil domai...		Lus10020947 [exp]	8.4	0.8758
AT5G57860			Ubiquitin-like superfamily pro...		Lus10035816 [exp]	8.8	0.8684
AT5G53045			unknown protein		Lus10017942 [exp]	10.4	0.8797

Compare expression of checked genes

Lus10002109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.