Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33920 533 / 0 Protein phosphatase 2C family protein (.1) AT3G51370 371 / 7e-127 Protein phosphatase 2C family protein (.1.2) AT5G66080 371 / 1e-126 Protein phosphatase 2C family protein (.1) AT3G12620 355 / 2e-120 Protein phosphatase 2C family protein (.1.2) AT5G06750 348 / 1e-117 Protein phosphatase 2C family protein (.1.2.3) AT4G38520 346 / 1e-116 Protein phosphatase 2C family protein (.1.2) AT3G55050 343 / 7e-116 Protein phosphatase 2C family protein (.1.2) AT3G17090 343 / 1e-115 Protein phosphatase 2C family protein (.1.2) AT5G02760 310 / 7e-103 Protein phosphatase 2C family protein (.1) AT3G16560 140 / 8e-37 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013896 [exp] 738 / 0 AT4G33920 554 / 0.0 Protein phosphatase 2C family protein (.1) Lus10011521 [exp] 468 / 6e-165 AT4G33920 483 / 2e-171 Protein phosphatase 2C family protein (.1) Lus10019302 [exp] 466 / 3e-164 AT4G33920 472 / 4e-167 Protein phosphatase 2C family protein (.1) Lus10027825 [exp] 372 / 1e-126 AT4G38520 586 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10005054 [exp] 368 / 2e-125 AT4G38520 582 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10041861 [exp] 365 / 5e-124 AT3G51370 630 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10025076 [exp] 362 / 6e-123 AT4G38520 609 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10024008 [exp] 362 / 8e-123 AT4G38520 605 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10023470 [exp] 360 / 3e-122 AT3G12620 612 / 0.0 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G297200 [exp] 592 / 0 AT4G33920 563 / 0.0 Protein phosphatase 2C family protein (.1) Potri.009G091600 [exp] 568 / 0 AT4G33920 561 / 0.0 Protein phosphatase 2C family protein (.1) Potri.007G051900 [exp] 512 / 0 AT4G33920 460 / 1e-162 Protein phosphatase 2C family protein (.1) Potri.016G045600 [exp] 377 / 8e-129 AT5G06750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.005G108500 [exp] 377 / 1e-128 AT3G51370 646 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.004G177100 [exp] 373 / 2e-127 AT4G38520 608 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.006G192600 [exp] 372 / 7e-127 AT5G06750 572 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.009G137400 [exp] 371 / 2e-126 AT4G38520 657 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.007G061100 [exp] 369 / 9e-126 AT3G51370 590 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G214700 [exp] 354 / 5e-120 AT3G12620 542 / 0.0 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10002110 pacid=23166349 polypeptide=Lus10002110 locus=Lus10002110.g ID=Lus10002110.BGIv1.0 annot-version=v1.0 ATGGTGATGCGCTCTTGCTTCCGGCCGTTGGAGAGGTGCTTTGTCCGCCGCGGCGGTGATGGGTTGTTGTGGCACTCTGATTTGAAGCCTCATGCGTCTG GAGACTATTCCATCGCTGCGGTTCAGGCCAATTCCAATATGGAGGATCAGAGCCAAGTTTTCACCTCTCCCTCCGCTACTTATGTTGGGATTTACGACGG ACATGGTGGCCCCGAAGCTTCTAGATTCGTCAACAAGCACTTGTTTCCTTTCATGCACAGTATTTCACTGTTTGATTTTGTCTTGCGTGGAACCCTACCA GCAATGCTCAAGTGGGTCAGGGTTTTACTATTTGCTGCTCCTTCATCATACAGTAGTTTTATGCCTATTCCGATATTGCACAGAGCAAACAAATTCGCGA ATGAGCAAGGGGGTTTGTCAGTGGATGTGATAAAGAAGGCATTCAATGCAACCGAGGAGGAGTTCTGTCATTTAGTGAACCGATCACTCCAAGTGAAGCC TCAAATTGCTTCAGTAGGGTCTTGCTGTCTGGTTGGTGCCATTTCAAACGATGTGTTATATGTTGCCAATCTTGGAGACTCGAGGGCAGTGCTTGGCAGA AAGGTGAGTGGATACAGGTCAAATCCGGTAATTTCAGAAAGACTATCAACGGACCACAATGTTAAAGCTGAGGAGGTGAGGAAGGAAGTTCAGGCACTTC ATCCTGACGATTCACAGATTGTGGTGTATGCTCGGGGATGTTGGAGGATTAAGGGCATCATTCAGGTATCAAGATCTATCGGAGACATGTATTTGAAGAA ACCTGAAATCAATAGAGATCCCTTTTTCCAGCAATTTGGAAATCCAATCCCCTTGAAACGGGCTGTAGTGACTGCAGAACCTTCAATCCTAATTAGGAAG CTGAAGCCAGATGACTTATTCCTTATATTTGCTTCAGATGGTCTTTGGGATCAATTGAGTGATGAAGAAGCAGTACAGATTGTGTTCAATAACCCCAGAG CTGGGATTGCCAAGAGACTAGTAAGAGCTGCCTTGAACAAAGCAGCAATGAAGAAGGAATTAAGATACGATGACATAAAAGATGTACAAAAGGGAGTAAG ACGGCACATTCATGACGATATCACTGTGATCGTGATATTTCTTGATCAACCGAGAAGGTCTTCTTCAAATGGTAGATTGAAGAAGGACGCCATCGGCTGT ACCTATGCTCCCATCGACATTTACTCTCGAAACGCTCCTCAATGA
AA sequence Show only first row Show all	>Lus10002110 pacid=23166349 polypeptide=Lus10002110 locus=Lus10002110.g ID=Lus10002110.BGIv1.0 annot-version=v1.0 MVMRSCFRPLERCFVRRGGDGLLWHSDLKPHASGDYSIAAVQANSNMEDQSQVFTSPSATYVGIYDGHGGPEASRFVNKHLFPFMHSISLFDFVLRGTLP AMLKWVRVLLFAAPSSYSSFMPIPILHRANKFANEQGGLSVDVIKKAFNATEEEFCHLVNRSLQVKPQIASVGSCCLVGAISNDVLYVANLGDSRAVLGR KVSGYRSNPVISERLSTDHNVKAEEVRKEVQALHPDDSQIVVYARGCWRIKGIIQVSRSIGDMYLKKPEINRDPFFQQFGNPIPLKRAVVTAEPSILIRK LKPDDLFLIFASDGLWDQLSDEEAVQIVFNNPRAGIAKRLVRAALNKAAMKKELRYDDIKDVQKGVRRHIHDDITVIVIFLDQPRRSSSNGRLKKDAIGC TYAPIDIYSRNAPQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33920			Protein phosphatase 2C family ...		Lus10002110 [exp]	0	1
AT4G33920			Protein phosphatase 2C family ...		Lus10013896 [exp]	1.0	0.9832
					Lus10025204 [exp]	2.4	0.9430
AT1G42990	bZIP	AtBZIP60	Bbasic region/leucine zipper m...		Lus10040069 [exp]	2.4	0.9519
AT5G47070			Protein kinase superfamily pro...		Lus10001088 [exp]	3.2	0.9147
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Lus10028830 [exp]	4.4	0.9058
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10024263 [exp]	4.5	0.9373
AT5G39670			Calcium-binding EF-hand family...		Lus10042369 [exp]	6.0	0.9188
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10022749 [exp]	6.5	0.9100
AT5G48290			Heavy metal transport/detoxifi...		Lus10025181 [exp]	6.7	0.9234
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10041446 [exp]	6.9	0.9140

Compare expression of checked genes

Lus10002110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.