Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013898 [exp] 203 / 1e-67 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002111 pacid=23166364 polypeptide=Lus10002111 locus=Lus10002111.g ID=Lus10002111.BGIv1.0 annot-version=v1.0 ATGTCATTCCAATTTGGAGGTGATTCCTTCGGTAATGGCTCAAAGGAGACTTCTTCTTGGTATTGTTCATCCTTCCCATTCCCCAAACCTCAGCCTGCAC CGCCACCTTCTGTGTTCGATTTCTCCGATACTAAACTGAGTAATTTCACAAACTTCCCAGCCACGCATCACAGCTTTCATCCAGGCATGGTCGCAGGTCC AGCTGGAGTTGCACAGGGAGCTTTGTTTCTTCCAGTATTTATACTTCCAGTGATGCAAGTTCTAATCTCTGGTAGCTTTGCCGTAGCAGTTCCCATAAGT CAATTTCCTGGATCAATGGCCCTTTCATTCACTGAAGTCCCTAAAGCTCCTGTCTTTGGACATGCTTGCAATGGTTTTCCAACAACACTATCCTCTGGTG CTGGTGCTGGTGCTGGTGCCGCTACTAAAGTTGGATCTGCTGCATTTCCTCCACCAGCAATTTTTGGAGGACCATCATCAGCTACTGCTAAAAAGGTTGA ATCTGCTACGCTTCTGCAGCCCGCGTCTTATGGCGGATGCAATGCACATGTTGATGAAGGATTTTGGTGCTGA
AA sequence Show only first row Show all	>Lus10002111 pacid=23166364 polypeptide=Lus10002111 locus=Lus10002111.g ID=Lus10002111.BGIv1.0 annot-version=v1.0 MSFQFGGDSFGNGSKETSSWYCSSFPFPKPQPAPPPSVFDFSDTKLSNFTNFPATHHSFHPGMVAGPAGVAQGALFLPVFILPVMQVLISGSFAVAVPIS QFPGSMALSFTEVPKAPVFGHACNGFPTTLSSGAGAGAGAATKVGSAAFPPPAIFGGPSSATAKKVESATLLQPASYGGCNAHVDEGFWC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10002111 [exp]	0	1
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10019490 [exp]	3.5	0.8446
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021648 [exp]	5.2	0.8372
AT2G26530		AR781	Protein of unknown function (D...		Lus10032881 [exp]	7.0	0.8679
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Lus10017050 [exp]	8.8	0.8594
AT4G27280			Calcium-binding EF-hand family...		Lus10033753 [exp]	10.6	0.8603
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10029757 [exp]	12.0	0.8390
AT3G20600		NDR1	non race-specific disease resi...		Lus10043067 [exp]	13.9	0.8535
AT1G72460			Leucine-rich repeat protein ki...		Lus10027645 [exp]	14.1	0.8254
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10010238 [exp]	17.2	0.8492
AT5G67300	MYB	ATMYB44, AtMYBr...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10010260 [exp]	17.5	0.8420

Compare expression of checked genes

Lus10002111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.