Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16250 525 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G63220 122 / 2e-31 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G67480 113 / 5e-28 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G55270 111 / 5e-27 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G60570 109 / 2e-26 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30090 97 / 4e-22 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G22040 97 / 9e-22 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G02870 93 / 2e-20 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT1G27420 89 / 3e-19 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G14330 88 / 6e-19 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013899 [exp] 773 / 0 AT1G16250 523 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10022061 [exp] 120 / 9e-31 AT3G63220 476 / 7e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10019425 [exp] 116 / 2e-28 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10041299 [exp] 112 / 2e-27 AT5G60570 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10001071 [exp] 112 / 3e-27 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037413 [exp] 110 / 6e-27 AT5G60570 589 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10042824 [exp] 110 / 1e-26 AT1G30090 578 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10028121 [exp] 106 / 3e-25 AT1G30090 583 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017821 [exp] 103 / 4e-24 AT3G61350 328 / 3e-110 SKP1 interacting partner 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G004500 [exp] 616 / 0 AT1G16250 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G050600 [exp] 133 / 2e-35 AT3G63220 535 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.005G211700 [exp] 132 / 6e-35 AT3G63220 510 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G059200 [exp] 125 / 3e-32 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.013G104300 [exp] 124 / 7e-32 AT1G67480 473 / 1e-167 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.008G176000 [exp] 117 / 2e-29 AT1G67480 487 / 3e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.006G193800 [exp] 114 / 4e-28 AT1G30090 604 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G217700 [exp] 114 / 7e-28 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G008000 [exp] 112 / 4e-27 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G091900 [exp] 96 / 2e-21 AT1G22040 595 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10002112 pacid=23166361 polypeptide=Lus10002112 locus=Lus10002112.g ID=Lus10002112.BGIv1.0 annot-version=v1.0 ATGAAAGAAGGTTTTGATTTCTGCTTTTTGGTCAATGGCAGGGAAGATGAACATGAACCTATAATTCCTGGATTGCCAGATGACTTGTCTTTACGTTGCC TGGCGAAGTTGTCACACGGATACCATGGGAAACTTGAAACTGTCTCCAAAAGGTGGAACCAGTTGATTTGCAGCTCCGAATATGCACATTATAAAGCCAA AAAGGGATGGTGTGGCAATTGGTTGTTTGTTCTAACCGAACAGTCTCAGAGGCAGTGGGTTGCGTATGATCCCGAGGCTAACCGATGGCATCCTCTGCCG AAGATTACAGGAGAGTTTTCCGATTGGCAGCACTTTGGATTCTCTTGTGTCTGTGTTCATAATCGGCTGTTGGTGATTGGAGGAACCTATGCGCAACTTG ATTCGAGTTGCCAAAAGCCTTTCATTACTAATCAGGTGTTAAAGTTTGATCCTTTTACGAAACAATGGTCTGATGTGGCGAGAATGCGGACAGCACGTTC ACAGTTTGCATGCAGTGTGGTTTCTGGGAAGGTTTATGTAGCCGGGGGACGCAACTTGTGCTGCACCACGGGGATTTCACTTGCTGAGGTTTATGATCCT CTAACAGACAAATGGGAGGAGTTGCCTCCGATGCCTGTTCCACAAGTGGACTGTTTAGGCTTGTCATTTCGAGGCAAATTTCACGTTTTAAGTGACCAGG CAGGCTGCTTGTCAGATGTGAACATGTCTCAAGGTTTTGATCCATCACTTAGAACATGGGCAACAATGGAGGACATTTGGCCTTTCTCCAGGGCAATGCA GTTTGCAGTCCAGGTAATGGGCGATGGGCAAGTATATACAGTTGTTGACTGGGGTGAGAGCCTTATTAAAACAAGGGACTCCGAAGTTGGGGAGTGGTAT AACGTTGGTTCTGTTCCTGCTGTGATCCTAAGTAACCATGCACGGGCGTTAGAAGCCTTTGCTTATGGGTTTGCTTCCTTGAGAGGTGAACTATATGTCT TGGGCGGGAAAGTTCTCAAGTGGGAAGAAGCAGGAGCTGGGAGGTTCGATATCGTAAGATTGGGTCTGGTGAGGGTTTGCGATCCAAAGGTTAGGCCGTT GAAGTGGAAAGAAACTCGGCCGATGTGTGGGTTTGCACGTGGCTGTATATTGGGATGTGCTTCCTTGGAGGAGGAACAATCTATATGA
AA sequence Show only first row Show all	>Lus10002112 pacid=23166361 polypeptide=Lus10002112 locus=Lus10002112.g ID=Lus10002112.BGIv1.0 annot-version=v1.0 MKEGFDFCFLVNGREDEHEPIIPGLPDDLSLRCLAKLSHGYHGKLETVSKRWNQLICSSEYAHYKAKKGWCGNWLFVLTEQSQRQWVAYDPEANRWHPLP KITGEFSDWQHFGFSCVCVHNRLLVIGGTYAQLDSSCQKPFITNQVLKFDPFTKQWSDVARMRTARSQFACSVVSGKVYVAGGRNLCCTTGISLAEVYDP LTDKWEELPPMPVPQVDCLGLSFRGKFHVLSDQAGCLSDVNMSQGFDPSLRTWATMEDIWPFSRAMQFAVQVMGDGQVYTVVDWGESLIKTRDSEVGEWY NVGSVPAVILSNHARALEAFAYGFASLRGELYVLGGKVLKWEEAGAGRFDIVRLGLVRVCDPKVRPLKWKETRPMCGFARGCILGCASLEEEQSI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16250			Galactose oxidase/kelch repeat...		Lus10002112 [exp]	0	1
AT2G36330			Uncharacterised protein family...		Lus10042123 [exp]	1.0	0.8881
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10030251 [exp]	2.2	0.8378
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10000913 [exp]	2.8	0.8467
AT1G53510		ATMPK18	ARABIDOPSIS THALIANA MAP KINAS...		Lus10013702 [exp]	2.8	0.8400
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002014 [exp]	3.9	0.8444
AT1G53510		ATMPK18	ARABIDOPSIS THALIANA MAP KINAS...		Lus10005568 [exp]	6.8	0.7944
AT4G10430			TMPIT-like protein (.1.2.3)		Lus10017356 [exp]	8.5	0.7970
AT5G44005			unknown protein		Lus10003610 [exp]	8.8	0.8270
AT5G44005			unknown protein		Lus10008220 [exp]	9.0	0.8184
AT2G47970			Nuclear pore localisation prot...		Lus10027618 [exp]	9.2	0.7950

Compare expression of checked genes

Lus10002112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.