Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49850 87 / 5e-20 RING/U-box superfamily protein (.1) AT2G15580 72 / 9e-15 RING/U-box superfamily protein (.1.2) AT1G68070 61 / 3e-10 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT4G26400 58 / 2e-09 RING/U-box superfamily protein (.1.2) AT5G10650 58 / 2e-09 RING/U-box superfamily protein (.1.2) AT1G60360 58 / 2e-09 RING/U-box superfamily protein (.1) AT3G13430 57 / 3e-09 RING/U-box superfamily protein (.1.2.3) AT3G55530 57 / 3e-09 SDIR1 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) AT4G26580 57 / 4e-09 RING/U-box superfamily protein (.1.2) AT3G61180 57 / 4e-09 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013899 [exp] 162 / 3e-46 AT1G16250 523 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10001568 [exp] 57 / 5e-09 AT3G55530 361 / 9e-127 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10030120 [exp] 56 / 5e-09 AT2G15580 139 / 2e-41 RING/U-box superfamily protein (.1.2) Lus10000513 [exp] 56 / 7e-09 AT3G55530 389 / 7e-138 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10013397 [exp] 56 / 8e-09 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1) Lus10002706 [exp] 56 / 9e-09 AT3G55530 382 / 5e-135 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10004977 [exp] 56 / 9e-09 AT3G55530 371 / 1e-130 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10030728 [exp] 55 / 9e-09 AT1G20823 209 / 6e-69 RING/U-box superfamily protein (.1) Lus10034587 [exp] 56 / 1e-08 AT1G68070 489 / 6e-172 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G091200 [exp] 232 / 2e-75 AT1G49850 108 / 3e-28 RING/U-box superfamily protein (.1) Potri.001G297000 [exp] 218 / 4e-70 AT1G49850 107 / 2e-27 RING/U-box superfamily protein (.1) Potri.018G114500 [exp] 67 / 5e-13 AT2G15580 161 / 3e-50 RING/U-box superfamily protein (.1.2) Potri.006G190300 [exp] 66 / 2e-12 AT2G15580 170 / 2e-53 RING/U-box superfamily protein (.1.2) Potri.007G064401 [exp] 59 / 4e-10 AT1G20823 118 / 2e-33 RING/U-box superfamily protein (.1) Potri.004G122000 [exp] 57 / 4e-10 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1) Potri.010G201500 [exp] 58 / 1e-09 AT3G55530 310 / 2e-106 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Potri.006G144200 [exp] 57 / 1e-09 AT5G17600 90 / 3e-21 RING/U-box superfamily protein (.1) Potri.009G034700 [exp] 57 / 2e-09 AT3G55530 333 / 1e-115 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Potri.005G081200 [exp] 56 / 2e-09 AT1G15100 74 / 3e-17 RING-H2 finger A2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10002113 pacid=23166353 polypeptide=Lus10002113 locus=Lus10002113.g ID=Lus10002113.BGIv1.0 annot-version=v1.0 ATGACGAGCGCGTCGGAGCTGTTTTACCAGAGACGGTCGCGCGTTGGGCGGCCTAGTACCGAGTTACCTCTTGCCCTCGACCCTTCCGGTTCCGACCGTG GTTTCCACCTCCGACGCCACCACAGTCATCACGGTAACCATCCGATTCATAGCCACAGCAACACTCCCGGGCGCCATGATTTGGACGGATGCGATCCTCT TCGCAGATCTCTCCATGTCCGCCAGAATTACCATGGGGTCTCTGAACGATCATCTGCTCGGTTCGACCAAGGTTCCAGCCAGCATGCATCAAACAACAGT TCCAGCCCAGAAACATCCAGCAGCTCAGGCCGGCCTAGAGTGACTTCAAATGAGAGGCTGCCTGGACCAGTACTGCTTGCAAGGGCAAGGCTTCTTGAGA GATTGAGAGGAGTGTCCCTCTCTGGAAGCAGGCGAAATTCGAGACCTTCCTTCAGCACCCACAGCAGGGAGTACACATTTGGCGATGATCTCCGAGCAGT TGATGCAGGGGACTGGGGGATCAATTTTCTCGAGCCATGGTCTGCTGTAACTTCCCCGTACCGAGATTCAACCTCTGAAAGAGAGAGAATACAATCACTG AAGAAGACTAAACCTCCTGGTTTAACTCTGGAGCAACTCGGTCGTCTGAAGATGGAGGTGTTTCAGAATGCTGCAGAATGTGGAGGAGGAGGCGAGGAGG GAAGCTCAAGAGTGTCGTGGGATTGTAGCATATGCCTCGACAGTTTCGTTGAAGGAGATGAGCTGATTCGGCTGCCATGCGAACACCGTTTCCATTCTAC ATGCTTGGATCCGTGGATTCGAGCTTGCGGAGACTGCCCCTACTGCCGCAGAGATATAGTTTGTAAGTAG
AA sequence Show only first row Show all	>Lus10002113 pacid=23166353 polypeptide=Lus10002113 locus=Lus10002113.g ID=Lus10002113.BGIv1.0 annot-version=v1.0 MTSASELFYQRRSRVGRPSTELPLALDPSGSDRGFHLRRHHSHHGNHPIHSHSNTPGRHDLDGCDPLRRSLHVRQNYHGVSERSSARFDQGSSQHASNNS SSPETSSSSGRPRVTSNERLPGPVLLARARLLERLRGVSLSGSRRNSRPSFSTHSREYTFGDDLRAVDAGDWGINFLEPWSAVTSPYRDSTSERERIQSL KKTKPPGLTLEQLGRLKMEVFQNAAECGGGGEEGSSRVSWDCSICLDSFVEGDELIRLPCEHRFHSTCLDPWIRACGDCPYCRRDIVCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49850			RING/U-box superfamily protein...		Lus10002113 [exp]	0	1
AT5G60750			CAAX amino terminal protease f...		Lus10032326 [exp]	1.7	0.8879
AT1G04780			Ankyrin repeat family protein ...		Lus10011743 [exp]	4.0	0.8672
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Lus10035570 [exp]	4.9	0.8327
AT3G11090	AS2	LBD21	LOB domain-containing protein ...		Lus10028986 [exp]	6.2	0.8100
AT4G01200			Calcium-dependent lipid-bindin...		Lus10008731 [exp]	7.3	0.8266
AT1G61667			Protein of unknown function, D...		Lus10020075 [exp]	8.0	0.8409
AT4G23650		CDPK6, CPK3	Calcium dependent protein kina...		Lus10017537 [exp]	8.4	0.8262
AT3G07320			O-Glycosyl hydrolases family 1...		Lus10038211 [exp]	10.6	0.7944
AT1G70740			Protein kinase superfamily pro...		Lus10003711 [exp]	11.7	0.7595
AT1G70420			Protein of unknown function (D...		Lus10013011 [exp]	12.4	0.8438

Compare expression of checked genes

Lus10002113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.