Plant FIBer expression Database

Lus10002116 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G49870 335 / 2e-103 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013902
[exp]
1048 / 0 AT1G49870 454 / 2e-145 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G296700
[exp]
483 / 5e-161 AT1G49870 426 / 2e-137 unknown protein
Potri.009G090900
[exp]
474 / 1e-157 AT1G49870 451 / 4e-147 unknown protein
PFAM info
Representative CDS sequence
>Lus10002116 pacid=23166365 polypeptide=Lus10002116 locus=Lus10002116.g ID=Lus10002116.BGIv1.0 annot-version=v1.0
ATGGATCTAGGATGCTTGGACTTTGGTTGCCTCGATGCAGTGAACAAGCACTGCCGCCCTCACTGTAGCTCTGGATCAGATAGCGGCGGATCTGATTTGA
CAGAGACCGTCTCCTCTTCCGCTTCTAAGTTTGGCAAGAAGAGTTCGCCGAGGGGAAGTGGCCAACCAGCAAATGCTCTAAACAAACTTACATCCCAGAT
TAAGAAGCCTACTCGCCGTAAAACTAGTCCACTTAACTGGTCTCCGCGTAAGAAAGGGGATTCATACTTGAAGAGGAAAATTCAAATGTTACAGGAAGTT
GATGGCATGAAACAAACTCTGGATGAAACCCTTGAGGATTCAAATCCACACTACTGCAGAGTGATGAGGGAAAAAATAGCAGCACGGGAGGCTGCACGCA
AGGTCAAGGAGGCACAAAAGGCTGCATTGGTGGAAGCATCTTGGTGCCGAATACTTAAAGCTGCTAGGATTCAAAGCAAGGAAGCAGAAGACCTCCTTTT
CAAAGCAGAAAAGGCTGCTGCTGAAGCTTTTGAAGCAGCAATAGCTGTGGAAGTGATCATGGATGATATGCCAACTTTCCCTCACAGCCGTTCCATTTCG
AAACCTTCTGCAATAAGTAAAGCCGGATCTACTGCTCATAGTGTCAAAGTATCTTTCGAAACACCATTTGAAGTGGATAAAGAAGTGGCTTCAGCAGTTA
AAACTGCATTCATGAAGCTTGCCACTTGTGCACGTTCCAACGAAGATGAGTTCAGGAATTTGTTGCAGAAAATTAGTCAGAATCCAGAGACTAGTGTAGG
TGACCAAGAATTGATAGAGTGTTCATCAGAATCTGAACCAGATTCTGGCTTCAAAGCCAAGGCAGCAGCTGAATACAATGAATCCATGTCTCGAGACTCA
AGACAAAGGAGACACAAGAAGAGGCAGTCGTTGGATCTTGCTAATATGATGCTAAACAGGCTTAAATCCTTGAAAGAAGATGAGCTGTCTTCTCTGGCCA
CTATAGTTGCAACTTGTGGTTTAAATGCTGCATTGACAGAGATAGAAAGCACTAAGCACATTGCAAGTGGAACTCCCAATGTTCCGCGAAGGTTATCTTC
TGTAGATGCACCAGGCAGACATATCAGAAAGAAGCAAGCTGAGTCTGAACTTCCCAGCCTAGATAAGTTTCTGGTCAAGCACATGTCAAAGCTTGAGAAG
GAGGTTGAACAGGCTAAGCATAACAGGAAGAAAGAGGCAGGGTCAGGACATCCAGAGAATAAATCGGCTGATTACAACAGTGGAAAACTACAGTTGGATA
AGAAGACAAGTGAATGCGAAGCAGTTGCTGATTTGGGAAGTATTCTCGTCAAGCACTCATCCAAGTTTGAGACGGAGATTCAAGAAGCGAAGAAAAATTC
AGCTAAGGATTTTCAAATCAGCCACAAGAATGAAAATCAAGATGCAAGAAAGGACAGTGAGAAGTTATCATCATCTTGGGCCGTCAAGAGGGCAAAGGAC
GTTGTCCAAGATGTCCCTAGCTTAGATAAGTGTCTCGTCAAGCATGTTTCGAGACTTGAAAAAGAAGTCCAGGAAGCAAAGAACAGAACAAAAGACAGAG
AGTTGCGAAATGAGGAAGCAGCGGATAAAGAGAATGTCAACTTGAACAAAGAAGCATTTTCAGGCAAGAGCAGCAGGGAAAGCGAATACAACAAGATGCA
GACTAAGCAGCAAGCAAACGCTCACAACAATGACGGAGGAGAAGGGTTGGACAAAGTGTTAATAAAGCACGTGTCGAAGCTCGAAAGGGAGAAACTGGAG
TGGCGTATGAAGGAAGAAAGTGGTGGTAATGTCCAGAGAAGCAGCAGAAACATGCAGTTGCAGAGAAATGAAGAAGAAGGAAGTCTGGACCAAATACTGG
TGAAACCCAAATCAAGACTGGAGAGGGAGAAGATAAGCGGGTTTGAGGAGTCAGACAGAGTGGTGTCATCATCAAGCATGTTCATGTCACGTAGGCAAGC
GAGGGAGAAGGAGCTGAAAGAAGCATGTGATGGGTTAAGTTTTGGGAACTCCCTGAAACCACATCTGTCCAAACTTGAAAAGGAAAAGGCTGCTTGGATC
AAAGCTGAGGAAGAAGAAATAAGACAAGTGCTGTAA
AA sequence
>Lus10002116 pacid=23166365 polypeptide=Lus10002116 locus=Lus10002116.g ID=Lus10002116.BGIv1.0 annot-version=v1.0
MDLGCLDFGCLDAVNKHCRPHCSSGSDSGGSDLTETVSSSASKFGKKSSPRGSGQPANALNKLTSQIKKPTRRKTSPLNWSPRKKGDSYLKRKIQMLQEV
DGMKQTLDETLEDSNPHYCRVMREKIAAREAARKVKEAQKAALVEASWCRILKAARIQSKEAEDLLFKAEKAAAEAFEAAIAVEVIMDDMPTFPHSRSIS
KPSAISKAGSTAHSVKVSFETPFEVDKEVASAVKTAFMKLATCARSNEDEFRNLLQKISQNPETSVGDQELIECSSESEPDSGFKAKAAAEYNESMSRDS
RQRRHKKRQSLDLANMMLNRLKSLKEDELSSLATIVATCGLNAALTEIESTKHIASGTPNVPRRLSSVDAPGRHIRKKQAESELPSLDKFLVKHMSKLEK
EVEQAKHNRKKEAGSGHPENKSADYNSGKLQLDKKTSECEAVADLGSILVKHSSKFETEIQEAKKNSAKDFQISHKNENQDARKDSEKLSSSWAVKRAKD
VVQDVPSLDKCLVKHVSRLEKEVQEAKNRTKDRELRNEEAADKENVNLNKEAFSGKSSRESEYNKMQTKQQANAHNNDGGEGLDKVLIKHVSKLEREKLE
WRMKEESGGNVQRSSRNMQLQRNEEEGSLDQILVKPKSRLEREKISGFEESDRVVSSSSMFMSRRQAREKELKEACDGLSFGNSLKPHLSKLEKEKAAWI
KAEEEEIRQVL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G49870 unknown protein Lus10002116
[exp]
0 1
AT2G33560 BUBR1 BUB1-related (BUB1: budding un... Lus10030714
[exp]
1.0 0.9787
AT2G33560 BUBR1 BUB1-related (BUB1: budding un... Lus10013199
[exp]
2.0 0.9683
AT4G33270 AtCDC20.1, CDC2... cell division cycle 20.1, Tran... Lus10006851
[exp]
2.0 0.9754
AT3G44050 P-loop containing nucleoside t... Lus10008438
[exp]
3.9 0.9721
AT2G36200 P-loop containing nucleoside t... Lus10014216
[exp]
5.9 0.9663
AT4G33400 Vacuolar import/degradation, V... Lus10021729
[exp]
7.5 0.9650
AT1G72250 Di-glucose binding protein wit... Lus10013714
[exp]
8.1 0.9660
AT3G27330 zinc finger (C3HC4-type RING f... Lus10022324
[exp]
8.9 0.9569
AT3G06030 AtANP3, MAPKKK1... NPK1-related protein kinase 3 ... Lus10034060
[exp]
9.0 0.9589
AT4G01730 DHHC-type zinc finger family p... Lus10009971
[exp]
9.5 0.9554

Lus10002116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.