Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43740 273 / 1e-93 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT5G21090 271 / 5e-93 Leucine-rich repeat (LRR) family protein (.1) AT1G71830 218 / 3e-67 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT1G34210 214 / 9e-66 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT4G33430 213 / 9e-66 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT2G13790 202 / 2e-61 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT2G13800 190 / 6e-57 BAK8, ATSERK5 BRI1- ASSOCIATED KINASE 8, SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5, somatic embryogenesis receptor-like kinase 5 (.1) AT4G30520 129 / 2e-34 SARK SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1) AT5G10290 125 / 4e-33 leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G25560 125 / 5e-33 NIK2 NSP-interacting kinase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013902 [exp] 405 / 2e-135 AT1G49870 454 / 2e-145 unknown protein Lus10002579 [exp] 242 / 2e-81 AT5G21090 275 / 3e-94 Leucine-rich repeat (LRR) family protein (.1) Lus10020962 [exp] 217 / 3e-67 AT4G33430 989 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Lus10001807 [exp] 197 / 9e-64 AT5G21090 227 / 9e-76 Leucine-rich repeat (LRR) family protein (.1) Lus10004958 [exp] 197 / 9e-64 AT1G34210 215 / 2e-66 somatic embryogenesis receptor-like kinase 2 (.1) Lus10026751 [exp] 190 / 2e-61 AT5G21090 250 / 2e-85 Leucine-rich repeat (LRR) family protein (.1) Lus10042755 [exp] 191 / 3e-61 AT5G21090 199 / 8e-65 Leucine-rich repeat (LRR) family protein (.1) Lus10028716 [exp] 176 / 1e-51 AT1G71830 1000 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10006056 [exp] 146 / 1e-40 AT1G71830 731 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G296500 [exp] 330 / 2e-116 AT3G43740 278 / 1e-95 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.009G090700 [exp] 318 / 2e-111 AT3G43740 270 / 2e-92 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.009G018800 [exp] 271 / 7e-93 AT5G21090 354 / 6e-126 Leucine-rich repeat (LRR) family protein (.1) Potri.001G219500 [exp] 264 / 4e-90 AT5G21090 348 / 2e-123 Leucine-rich repeat (LRR) family protein (.1) Potri.003G166200 [exp] 247 / 3e-83 AT5G21090 275 / 2e-94 Leucine-rich repeat (LRR) family protein (.1) Potri.001G061600 [exp] 242 / 1e-81 AT5G21090 272 / 2e-93 Leucine-rich repeat (LRR) family protein (.1) Potri.007G082400 [exp] 221 / 2e-68 AT1G34210 954 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.005G083300 [exp] 219 / 1e-67 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Potri.003G023000 [exp] 211 / 7e-65 AT4G33430 961 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.001G206700 [exp] 209 / 4e-64 AT4G33430 927 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10002117 pacid=23166340 polypeptide=Lus10002117 locus=Lus10002117.g ID=Lus10002117.BGIv1.0 annot-version=v1.0 ATGGATGGCGCTGCTGGTAATTACGGTGTTGCTCTCCTTCCACTGTTCCTCATCGTCGTTACGATGCTTCTCTTTCCCTCCCTTTCCTTCTCCTCCAACA CTGAAGGAAATGTGCTGTTTGCAATGAGGAGCAAGCTCTCGGATCCAAACAAAGTCCTACAGAGCTGGGACCCAACCCTGGTTAATCCATGTACTTGGTT TCACGTCACCTGCGATTCTCAAAGTCATGTGATTCGCCTGGATTTGGGGAACTCTAACGTCTCTGGCACCCTCGGACCCGAGCTTGGACAGCTCCAACAC CTAAAGTATTTGGAACTTTACAGGAACGACGTAAGTGGGGAAATCCCGGAGGAGCTTGGGAATCTGAAGAGTCTTGTGAGCATGGACTTGTATTCCAACA GATTCTCAGGAGGCATACCAAAGTCCTTTGCCAAATTGAAGTCCCTCAGATTCCTGCGACTGAATGACAACAAGCTCAAAGGTTCAATTCCAAGGGAGCT CATTGCACTCGAGAACCTCAAAGTCTTTGATGTGTGTAATAATGATCTGTGTGGAACAATCCCTGTCGATGGTCCCTTTGCAACTTTCCCGATGACAAGC TATGAGAATAACTCGAGGCTGAACGGACCGGAGCTGAAGGGACTCGCCATGTACGACTTTGGGTGCTGA
AA sequence Show only first row Show all	>Lus10002117 pacid=23166340 polypeptide=Lus10002117 locus=Lus10002117.g ID=Lus10002117.BGIv1.0 annot-version=v1.0 MDGAAGNYGVALLPLFLIVVTMLLFPSLSFSSNTEGNVLFAMRSKLSDPNKVLQSWDPTLVNPCTWFHVTCDSQSHVIRLDLGNSNVSGTLGPELGQLQH LKYLELYRNDVSGEIPEELGNLKSLVSMDLYSNRFSGGIPKSFAKLKSLRFLRLNDNKLKGSIPRELIALENLKVFDVCNNDLCGTIPVDGPFATFPMTS YENNSRLNGPELKGLAMYDFGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43740			Leucine-rich repeat (LRR) fami...		Lus10002117 [exp]	0	1
AT5G03380			Heavy metal transport/detoxifi...		Lus10023924 [exp]	3.2	0.9466
AT4G10300			RmlC-like cupins superfamily p...		Lus10035660 [exp]	4.0	0.9361
AT4G27290			S-locus lectin protein kinase ...		Lus10038553 [exp]	6.5	0.9307
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10002589 [exp]	10.3	0.8892
AT4G27290			S-locus lectin protein kinase ...		Lus10014810 [exp]	12.6	0.9177
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10005992 [exp]	13.4	0.8924
					Lus10012065 [exp]	13.6	0.8948
AT5G50760			SAUR-like auxin-responsive pro...		Lus10011332 [exp]	14.1	0.9067
AT2G17150		NLP1	Plant regulator RWP-RK family ...		Lus10023931 [exp]	17.5	0.9098
AT4G27290			S-locus lectin protein kinase ...		Lus10016871 [exp]	19.0	0.9192

Compare expression of checked genes

Lus10002117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.