Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14860 291 / 2e-99 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT4G33905 281 / 1e-95 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT5G43140 224 / 4e-73 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT5G19750 102 / 2e-25 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT4G03410 84 / 1e-18 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT3G24570 81 / 7e-18 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT1G52870 81 / 4e-17 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT2G42770 63 / 1e-11 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT4G04470 62 / 2e-11 PMP22 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT4G14305 57 / 1e-09 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011424 [exp] 468 / 6e-169 AT2G14860 288 / 3e-98 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10018700 [exp] 226 / 2e-72 AT5G43140 253 / 2e-83 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10007761 [exp] 192 / 1e-58 AT5G43140 223 / 1e-70 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10039003 [exp] 94 / 7e-23 AT5G19750 241 / 1e-79 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10012098 [exp] 92 / 1e-21 AT5G19750 259 / 4e-86 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10034922 [exp] 89 / 6e-21 AT3G24570 330 / 4e-116 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10023648 [exp] 89 / 8e-21 AT3G24570 330 / 6e-116 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10010446 [exp] 88 / 2e-20 AT5G19750 258 / 2e-86 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10038626 [exp] 81 / 5e-18 AT3G24570 273 / 1e-93 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G296400 [exp] 317 / 2e-109 AT2G14860 300 / 6e-103 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.009G090600 [exp] 300 / 8e-103 AT4G33905 299 / 1e-102 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.014G017800 [exp] 159 / 2e-48 AT5G43140 183 / 2e-58 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.006G032500 [exp] 105 / 8e-27 AT5G19750 279 / 8e-94 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.016G029700 [exp] 101 / 6e-25 AT5G19750 257 / 5e-85 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.018G037100 [exp] 82 / 2e-18 AT3G24570 289 / 6e-100 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.018G081600 [exp] 78 / 4e-17 AT3G24570 309 / 7e-108 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.001G404600 [exp] 79 / 1e-16 AT1G52870 438 / 6e-154 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.011G123700 [exp] 77 / 5e-16 AT1G52870 472 / 1e-167 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.019G103200 [exp] 72 / 2e-14 AT4G03410 413 / 2e-145 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04117 [flax] [poplar] Mpv17_PMP22 Mpv17 / PMP22 family
Representative CDS sequence Show only first row Show all	>Lus10002118 pacid=23166359 polypeptide=Lus10002118 locus=Lus10002118.g ID=Lus10002118.BGIv1.0 annot-version=v1.0 ATGAGCGGCGCATTCATGTCGAAATCCAGCGTCCTCCGTGTCTTACGAGCCCAGACGACCGCCCGCATCGCCGACCCAGCGATATCGACGACGACGTCGA CCGTTAACCGGCTTCTGAGGAACCAAACGACGTCTCCGTCAAGAGCTCAATACTACCTCAGATTGCCGTCTCATTGTTTCAGGAAATCCAGCAATGACCT CTCCCCTTCAGCTCTATTCTCTTCTGCTTTCTCTTCTTCGACTTCTACTTCTACGGGGTCGTCGGCTACTAGGATTCCGTTCGTCTCGTGGTACCTGGAT ATGGTGAAAGCGCGTCCTATATTGACCAAGAGCCTCACCGCCTCGTTTATTTACACTGCAGCTGACCTTTCTTCTCAGACAATTTCAAAGGCTAGTTCAG TGCCATATGACTATGACTTGATGAGGACATCTCGGATGGCTGGATATGGGCTGCTAATTCTAGGGCCATCGCTGCATTATTGGTTCAACTTCGTCTCCAA GCTCTTCCCGAATCGAGATTTCGTTGCTACTTTGAAGAAAATGGCCATGGGACAGGCCATCTACGGACCTATTATGACTGTCGTGTTCTTCTCCACGATC GCTAGATTACAGGGTGAGAATGGTGCTGAGATTATGGCGCGGTTAAAAAGAGATCTACTTCCTACGATGCTCAATGGCGTTATGTACTGGCCGCTCTGTG ATTTCATAACTTTCAGATTCATCCCAGTCCATCTGCAGCCGTTGGTGAGCAATTCCTTCTCCTACGTGTGGACTGTCTACATGACATACATGGCTAGTAA AGAAAAAGTTGCAGCAGCAGCCAGCTAG
AA sequence Show only first row Show all	>Lus10002118 pacid=23166359 polypeptide=Lus10002118 locus=Lus10002118.g ID=Lus10002118.BGIv1.0 annot-version=v1.0 MSGAFMSKSSVLRVLRAQTTARIADPAISTTTSTVNRLLRNQTTSPSRAQYYLRLPSHCFRKSSNDLSPSALFSSAFSSSTSTSTGSSATRIPFVSWYLD MVKARPILTKSLTASFIYTAADLSSQTISKASSVPYDYDLMRTSRMAGYGLLILGPSLHYWFNFVSKLFPNRDFVATLKKMAMGQAIYGPIMTVVFFSTI ARLQGENGAEIMARLKRDLLPTMLNGVMYWPLCDFITFRFIPVHLQPLVSNSFSYVWTVYMTYMASKEKVAAAAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14860			Peroxisomal membrane 22 kDa (M...		Lus10002118 [exp]	0	1
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10034685 [exp]	3.9	0.9431
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Lus10010430 [exp]	7.7	0.9232
AT1G09590			Translation protein SH3-like f...		Lus10017232 [exp]	8.5	0.9430
AT2G40290			Eukaryotic translation initiat...		Lus10017435 [exp]	13.1	0.9390
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10004743 [exp]	14.1	0.9413
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10021646 [exp]	16.1	0.9362
AT5G60960		PNM1	PPR protein localized to the n...		Lus10034673 [exp]	16.9	0.9385
AT5G60670			Ribosomal protein L11 family p...		Lus10041308 [exp]	17.5	0.9268
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10015340 [exp]	18.7	0.9218
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10013183 [exp]	21.5	0.9384

Compare expression of checked genes

Lus10002118 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.