Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33890 289 / 2e-96 unknown protein AT2G14850 279 / 3e-93 unknown protein AT5G67410 161 / 2e-47 unknown protein AT2G24530 159 / 2e-45 unknown protein AT4G31440 143 / 2e-39 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011423 [exp] 592 / 0 AT4G33890 294 / 3e-98 unknown protein Lus10011422 [exp] 319 / 3e-107 AT2G14850 278 / 5e-92 unknown protein Lus10020146 [exp] 184 / 5e-55 AT2G24530 346 / 4e-117 unknown protein Lus10026942 [exp] 182 / 4e-54 AT2G24530 351 / 7e-119 unknown protein Lus10042444 [exp] 180 / 2e-53 AT2G24530 386 / 9e-133 unknown protein Lus10026225 [exp] 157 / 8e-45 AT2G24530 347 / 1e-117 unknown protein Lus10002120 [exp] 123 / 1e-34 AT2G14850 112 / 2e-31 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G090500 [exp] 380 / 7e-132 AT4G33890 305 / 4e-102 unknown protein Potri.009G090400 [exp] 373 / 5e-129 AT4G33890 318 / 2e-107 unknown protein Potri.001G296300 [exp] 370 / 4e-128 AT4G33890 325 / 2e-110 unknown protein Potri.001G296200 [exp] 328 / 3e-111 AT4G33890 295 / 3e-98 unknown protein Potri.018G005700 [exp] 191 / 2e-57 AT2G24530 443 / 8e-155 unknown protein Potri.006G274800 [exp] 179 / 1e-52 AT2G24530 415 / 1e-143 unknown protein Potri.003G187400 [exp] 153 / 2e-43 AT2G24530 229 / 7e-72 unknown protein Potri.001G037500 [exp] 144 / 7e-40 AT2G24530 236 / 2e-74 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002119 pacid=23166363 polypeptide=Lus10002119 locus=Lus10002119.g ID=Lus10002119.BGIv1.0 annot-version=v1.0 ATGTCATCCAATCAACGCTACACGCGGGTTGATACGTTGGAGATCAAGGCTCTACTGATCAAAAGGATCGGAAATCACAGAGCTGACATGTACTTCGATC AGCTAACAAGATTTCTCACCTTGAAGACCACCAAGTCCGAATTCGATAGGTTTTGCGTTCGAATCATCGGCAGAGAAAATGTTCGTCTTCACAACCAGCT CTTAAGATCCATTCTCAAGAATGCTTGTCCCGGGAAGGTTCCTCCTGCTTTCAAAGCTGCAAAAAGATCGCCACTCGGCAGCCTCAACGTTAAAGTCTCA GGTGGTAATAGTAGTCTTCATTCGCTCTATGGGGAAGCATTTCCTCCTTCACCTCGCAAGTGCAGATCCCCTCGAGATCGCAAGTTTAAGGATCGTCCTA GTCCTCTCGGGCCACTTGGTAAGCCCCACAGTATATTAAGTGATAGTGCTACTGAATTGCTTTCACTTGGAAGTAGACCTCTAGCGTCTGTGGAAGATGG GGAAGAGGTTGAACAGGTTGCAGGAAGTCCCGGTGTTCAGAGTCGTAGCCCGGTCACTGCTCCTTTTGGTATCTCCATGAATTTTGGACTGTCTCGTAAG GCTATCCCTTACATATCTGCACTAAACAGTACTCAGTACCGGCAGACCTGCCAGAGAATCGGTGAGCTACCTGATACGAGATTATTGAGAGAACGAATGC AGCAGAAGTTACAGGAGGGGATGCGAGTCTCGATGGATTGTGCAAATGTGTTGAATAACGCATTGGATGCGTATTTGAAAAGGTTGATTGAGCCTTGTAT GAGTCTTTCCGGCTCAAGGTCTCGAAGTTTGCACGACTCAAGTGGTTATCGATTCGTTCCTGGATCGAATGAGGTGTCATCTGTTCGGTACAGGCAACGA ATATCAGAACCTCGCTTCGGTTCAATGCTGGACTTTCGTGTATCAGTTGAATCGAATCCTCAGATTCTGGGACCAGATTGGGCAGTGCAATTGGAGAAAG TTAACCTTGCTAGCTTCTGA
AA sequence Show only first row Show all	>Lus10002119 pacid=23166363 polypeptide=Lus10002119 locus=Lus10002119.g ID=Lus10002119.BGIv1.0 annot-version=v1.0 MSSNQRYTRVDTLEIKALLIKRIGNHRADMYFDQLTRFLTLKTTKSEFDRFCVRIIGRENVRLHNQLLRSILKNACPGKVPPAFKAAKRSPLGSLNVKVS GGNSSLHSLYGEAFPPSPRKCRSPRDRKFKDRPSPLGPLGKPHSILSDSATELLSLGSRPLASVEDGEEVEQVAGSPGVQSRSPVTAPFGISMNFGLSRK AIPYISALNSTQYRQTCQRIGELPDTRLLRERMQQKLQEGMRVSMDCANVLNNALDAYLKRLIEPCMSLSGSRSRSLHDSSGYRFVPGSNEVSSVRYRQR ISEPRFGSMLDFRVSVESNPQILGPDWAVQLEKVNLASF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33890			unknown protein		Lus10002119 [exp]	0	1
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10037188 [exp]	7.1	0.7220
AT2G39760		ATBPM3	BTB/POZ/MATH-domains containin...		Lus10004701 [exp]	10.4	0.6784
AT4G29010		AIM1	ABNORMAL INFLORESCENCE MERISTE...		Lus10011102 [exp]	12.2	0.7365
AT4G15420			Ubiquitin fusion degradation U...		Lus10015140 [exp]	22.9	0.7263
AT5G47940			unknown protein		Lus10019713 [exp]	27.1	0.6660
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10006071 [exp]	27.3	0.6925
AT3G16270			ENTH/VHS family protein (.1)		Lus10038289 [exp]	27.4	0.6997
AT3G12400		ELC, ATELC	Ubiquitin-conjugating enzyme/R...		Lus10008690 [exp]	28.0	0.6692
AT2G37975			Yos1-like protein (.1)		Lus10000226 [exp]	32.4	0.7044
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Lus10010328 [exp]	32.6	0.7024

Compare expression of checked genes

Lus10002119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.