Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14850 97 / 1e-25 unknown protein AT4G33890 94 / 5e-24 unknown protein AT5G67410 64 / 4e-13 unknown protein AT2G24530 64 / 5e-13 unknown protein AT4G31440 57 / 1e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011422 [exp] 199 / 5e-64 AT2G14850 278 / 5e-92 unknown protein Lus10011423 [exp] 106 / 1e-28 AT4G33890 294 / 3e-98 unknown protein Lus10002119 [exp] 100 / 3e-26 AT4G33890 297 / 2e-99 unknown protein Lus10026942 [exp] 62 / 2e-12 AT2G24530 351 / 7e-119 unknown protein Lus10020146 [exp] 62 / 3e-12 AT2G24530 346 / 4e-117 unknown protein Lus10042444 [exp] 62 / 4e-12 AT2G24530 386 / 9e-133 unknown protein Lus10026225 [exp] 45 / 3e-06 AT2G24530 347 / 1e-117 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G296300 [exp] 112 / 8e-31 AT4G33890 325 / 2e-110 unknown protein Potri.009G090500 [exp] 106 / 1e-28 AT4G33890 305 / 4e-102 unknown protein Potri.009G090400 [exp] 104 / 6e-28 AT4G33890 318 / 2e-107 unknown protein Potri.001G296200 [exp] 100 / 3e-26 AT4G33890 295 / 3e-98 unknown protein Potri.001G037500 [exp] 55 / 9e-10 AT2G24530 236 / 2e-74 unknown protein Potri.006G274800 [exp] 54 / 2e-09 AT2G24530 415 / 1e-143 unknown protein Potri.018G005700 [exp] 54 / 2e-09 AT2G24530 443 / 8e-155 unknown protein Potri.003G187400 [exp] 53 / 3e-09 AT2G24530 229 / 7e-72 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002120 pacid=23166351 polypeptide=Lus10002120 locus=Lus10002120.g ID=Lus10002120.BGIv1.0 annot-version=v1.0 ATGTCTATATCTAGCAAGTTTAATGTAGCACGCGAGACCTGTCAGAATAATGGTGAGCTGCCTGATACGAGATTATTGAGGAGCCGGCTGCAGCAGAAGT TGCAGGATGAAGGTTTGCGAGTATCGGTTGACTGTGTTGACTTGCTGAATAAGTCCTTGGATGTATACTTGAAAAGGCTGGTTGAGCCTTGTATGGGCTT AGCTACCTCAAGGTCGAGAAATGGCCGCTTGCAGGAATCTGTTTGTGGGTCAATGCTTGACTTTCGTGTATCCGTGGAGTCGAATCCTCAAATGTTGGGA GTAGAGTGGGCTGAGCAATTGGAGAGAATTATCTTGCGCGCATCTGAGGAGTGA
AA sequence Show only first row Show all	>Lus10002120 pacid=23166351 polypeptide=Lus10002120 locus=Lus10002120.g ID=Lus10002120.BGIv1.0 annot-version=v1.0 MSISSKFNVARETCQNNGELPDTRLLRSRLQQKLQDEGLRVSVDCVDLLNKSLDVYLKRLVEPCMGLATSRSRNGRLQESVCGSMLDFRVSVESNPQMLG VEWAEQLERIILRASEE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14850			unknown protein		Lus10002120 [exp]	0	1
AT1G57790			F-box family protein (.1)		Lus10021352 [exp]	5.9	0.7775
AT5G06810			Mitochondrial transcription te...		Lus10012021 [exp]	11.6	0.7281
AT1G26580			unknown protein		Lus10026655 [exp]	19.0	0.7625
AT3G11890			Sterile alpha motif (SAM) doma...		Lus10017225 [exp]	25.4	0.7178
AT5G25050			Major facilitator superfamily ...		Lus10026893 [exp]	29.2	0.6587
AT1G02290			unknown protein		Lus10028606 [exp]	37.2	0.6721
AT3G58030			RING/U-box superfamily protein...		Lus10004162 [exp]	47.7	0.6683
AT1G52620			Pentatricopeptide repeat (PPR)...		Lus10036090 [exp]	51.7	0.6718
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10042859 [exp]	55.3	0.6568
AT3G14470			NB-ARC domain-containing disea...		Lus10006794 [exp]	66.4	0.6449

Compare expression of checked genes

Lus10002120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.