Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49880 247 / 4e-84 EMB3106, AtErv1, Erv1 EMBRYO DEFECTIVE 3106, Erv1/Alr family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011421 [exp] 372 / 3e-133 AT1G49880 249 / 7e-85 EMBRYO DEFECTIVE 3106, Erv1/Alr family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G090200 [exp] 272 / 6e-94 AT1G49880 259 / 9e-89 EMBRYO DEFECTIVE 3106, Erv1/Alr family protein (.1) Potri.001G296000 [exp] 167 / 2e-52 AT1G49880 143 / 3e-43 EMBRYO DEFECTIVE 3106, Erv1/Alr family protein (.1) Potri.010G115700 [exp] 40 / 0.0009 AT2G01270 660 / 0.0 quiescin-sulfhydryl oxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04777 [flax] [poplar] Evr1_Alr Erv1 / Alr family
Representative CDS sequence Show only first row Show all	>Lus10002121 pacid=23166355 polypeptide=Lus10002121 locus=Lus10002121.g ID=Lus10002121.BGIv1.0 annot-version=v1.0 ATGTCCGACGATCATCCACTGCACCCTCTGTTCCAGAGCTTCCAACGCTTCACCAATTGCGTTCAGACTCACGTTTCCAATTTCCTTGCCCAGCCGCAAA AACGCCCATCTCCAGGCAACGACCTTGTATTGTCAGTTTCTTCTGCTTCTTCAGCATCGTCTACGAAAGTGCATCCGTCAAATATAGATGTCTCCCTCGT TCAACCCATTGACATCATCAACAAGAAAAAAACTGCTCCTGTGTCTAAAGAAGAGCTTGGAAGAGCTACCTGGACTTTTCTTCATACACTTGCTGCTCAG TATCCTGAACATCCAACTCGGCAACAAAAGAAAGATGTTAAAGAGCTGATGGCAATATTATCTCGGATGTACCCCTGTAAGGAATGTGCAGATCACTTCA AAGAAATTCTGAGATCAAATCCTGTTCAGGTGGGTTCTCAACCTGAATTCTCCCGATGGATGTGTCATGTGCATAATGTTGTAAACAGGAGCCTTGGTAA GCCGGTTTTCGTTTGTGAGCGTGTTGATGCAAGGTGGGGAAAGCTGGACTGTGAGCAAAGAATGTGTGATCTCGAGGGGACTACTGCTCCTTTTGGGAGA GACTAG
AA sequence Show only first row Show all	>Lus10002121 pacid=23166355 polypeptide=Lus10002121 locus=Lus10002121.g ID=Lus10002121.BGIv1.0 annot-version=v1.0 MSDDHPLHPLFQSFQRFTNCVQTHVSNFLAQPQKRPSPGNDLVLSVSSASSASSTKVHPSNIDVSLVQPIDIINKKKTAPVSKEELGRATWTFLHTLAAQ YPEHPTRQQKKDVKELMAILSRMYPCKECADHFKEILRSNPVQVGSQPEFSRWMCHVHNVVNRSLGKPVFVCERVDARWGKLDCEQRMCDLEGTTAPFGR D

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49880		EMB3106, AtErv1...	EMBRYO DEFECTIVE 3106, Erv1/Al...		Lus10002121 [exp]	0	1
AT1G15860			Domain of unknown function (DU...		Lus10019598 [exp]	1.7	0.9162
AT3G04400		EMB2171	embryo defective 2171, Ribosom...		Lus10022882 [exp]	2.8	0.9220
AT5G09380			RNA polymerase III RPC4 (.1)		Lus10019022 [exp]	4.0	0.9124
AT1G76370			Protein kinase superfamily pro...		Lus10007041 [exp]	5.9	0.9224
AT3G58180			ARM repeat superfamily protein...		Lus10006688 [exp]	16.4	0.9044
AT5G57280		RID2	root initiation defective 2, S...		Lus10028960 [exp]	19.8	0.9017
AT2G46850			Protein kinase superfamily pro...		Lus10005138 [exp]	22.2	0.8871
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Lus10032591 [exp]	23.7	0.9066
AT3G58180			ARM repeat superfamily protein...		Lus10007032 [exp]	26.1	0.8847
AT2G16940			Splicing factor, CC1-like (.1....		Lus10034466 [exp]	28.4	0.8791

Compare expression of checked genes

Lus10002121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.