Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19650 80 / 1e-16 cyclin-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011420 [exp] 450 / 2e-159 AT3G19650 113 / 3e-29 cyclin-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G088600 [exp] 172 / 1e-50 AT3G19650 124 / 3e-33 cyclin-related (.1) Potri.001G295000 [exp] 107 / 6e-28 AT3G19650 65 / 4e-13 cyclin-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002122 pacid=23166347 polypeptide=Lus10002122 locus=Lus10002122.g ID=Lus10002122.BGIv1.0 annot-version=v1.0 ATGGGTGGGCGATGGACAGTGCCCGAACCGCCCCGTTTCCATCTGTATCTGCCCCAGAGCCGCAGCAGCAGAGCTCATTCCACAGGTTTAGGCACTCTCA AACTTCCCAAATGTCTCGTCGTGATCGTGATAGCGGCGGAAGGGATCGTTACGATCGCGATGGTGGCTCAAGGCACCGCCGCTCAGGGTTCGACAGGGAA CCCCGGTACCCGACAGGGAACCCAGTTTCCAAGCGTTTTCTTGATGCTTTCTTACTATAAGTTTTTGATGTCGTGCTTTATCATTGTGTGGCTAGCTATT CCCAAAAGAACTAGAAAGGATGAGAAGCCAGAGCCTGAACAGTTACTTAGTAGACCTGGTTCCCAAAGACAGCCCATCGACCTGCAAGATGCAGTGCCAG GTGGTGTTGAACCAGGAAGAATGGAATCTAAGTTGAAGTCTCCTGATAGGAAGAAAGAATCTGAAAAGAAATCCAGTGAGGATCATGCTAAGGACGCACC AAGTTCTGAACCAACTGTAGTGCCTCGATCTCGATCTGATTTCCAGCATGATGACAATCGTAAGGCTGGGCAAGTTGGTCGAGGCTTTGTCCGAAGGGCT ACCAATGACCGTGGATATTCGAAGGATGACAGACGTGAAAGGGCAGCAACCAGATCGGAAGCTACCAATTCAAACGAGAGAGACCGAAAATCAAACACCA AGGGTGGCGACAACAGCTTCTGGCGCCCACCTGTGAGGAGAAGACCTTCATTCAGGGAGCAAAAGATTCCAGTTGACTCTGAAAATGGTGACAAATCAGC CGTAGAATCCAATCGCTCTAGCCAGGTAGATCGTCCCGTGTCAGGTGGAGAAAGGAGGGACGGAAGAGACCGTTATCCCCGCAATGTCGACAGATTGGAT AGGAACAGGGGTGCATTTCTCGCCAGGGACAGGGAAGGATATGGAGGTGTTGTAAGAAGCAATTACATCGGAAGAGAAAGCTTGAATGGAGGAAAGCAAA GCTATCATCCTCAAAGTGGAAGGCGAGAAGAGAAATGGAAGCATGATCTGTTTGATGAGGCTACTAAAAGCCCTACCACAAAGAATGACGATGATCAAAT TGCCAGAGTAGAAGCACTATTGGCTTCATAG
AA sequence Show only first row Show all	>Lus10002122 pacid=23166347 polypeptide=Lus10002122 locus=Lus10002122.g ID=Lus10002122.BGIv1.0 annot-version=v1.0 MGGRWTVPEPPRFHLYLPQSRSSRAHSTGLGTLKLPKCLVVIVIAAEGIVTIAMVAQGTAAQGSTGNPGTRQGTQFPSVFLMLSYYKFLMSCFIIVWLAI PKRTRKDEKPEPEQLLSRPGSQRQPIDLQDAVPGGVEPGRMESKLKSPDRKKESEKKSSEDHAKDAPSSEPTVVPRSRSDFQHDDNRKAGQVGRGFVRRA TNDRGYSKDDRRERAATRSEATNSNERDRKSNTKGGDNSFWRPPVRRRPSFREQKIPVDSENGDKSAVESNRSSQVDRPVSGGERRDGRDRYPRNVDRLD RNRGAFLARDREGYGGVVRSNYIGRESLNGGKQSYHPQSGRREEKWKHDLFDEATKSPTTKNDDDQIARVEALLAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19650			cyclin-related (.1)		Lus10002122 [exp]	0	1
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10035444 [exp]	1.0	0.8462
AT1G28100			unknown protein		Lus10002573 [exp]	2.8	0.8370
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Lus10043172 [exp]	3.0	0.8417
AT1G73430			sec34-like family protein (.1....		Lus10001793 [exp]	7.2	0.8436
AT2G41950			unknown protein		Lus10016243 [exp]	9.5	0.8324
AT1G61700			RNA polymerases N / 8 kDa subu...		Lus10008095 [exp]	11.2	0.8197
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Lus10028387 [exp]	11.2	0.7911
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10014787 [exp]	11.7	0.8196
AT1G61700			RNA polymerases N / 8 kDa subu...		Lus10025907 [exp]	12.6	0.7936
AT2G01640			unknown protein		Lus10002816 [exp]	12.7	0.8258

Compare expression of checked genes

Lus10002122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.