Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43870 489 / 2e-173 Pectin lyase-like superfamily protein (.1) AT3G59850 486 / 3e-172 Pectin lyase-like superfamily protein (.1) AT2G43890 432 / 5e-151 Pectin lyase-like superfamily protein (.1) AT1G05660 424 / 7e-148 Pectin lyase-like superfamily protein (.1) AT1G05650 424 / 1e-147 Pectin lyase-like superfamily protein (.1) AT2G43880 417 / 8e-145 Pectin lyase-like superfamily protein (.1) AT2G43860 414 / 8e-144 Pectin lyase-like superfamily protein (.1) AT1G65570 395 / 3e-136 Pectin lyase-like superfamily protein (.1) AT2G40310 289 / 2e-94 Pectin lyase-like superfamily protein (.1) AT1G17150 286 / 1e-93 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011419 [exp] 759 / 0 AT2G43870 507 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10002125 [exp] 638 / 0 AT3G59850 509 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10002124 [exp] 491 / 4e-174 AT2G43870 505 / 7e-180 Pectin lyase-like superfamily protein (.1) Lus10011418 [exp] 489 / 4e-173 AT2G43870 499 / 2e-177 Pectin lyase-like superfamily protein (.1) Lus10022530 [exp] 464 / 3e-163 AT2G43870 471 / 4e-166 Pectin lyase-like superfamily protein (.1) Lus10002126 [exp] 457 / 2e-160 AT2G43870 461 / 1e-162 Pectin lyase-like superfamily protein (.1) Lus10008343 [exp] 399 / 2e-137 AT1G05650 425 / 1e-147 Pectin lyase-like superfamily protein (.1) Lus10010584 [exp] 394 / 1e-135 AT1G05660 424 / 2e-147 Pectin lyase-like superfamily protein (.1) Lus10005304 [exp] 392 / 2e-134 AT1G05660 420 / 1e-145 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G144400 [exp] 572 / 0 AT3G59850 476 / 2e-168 Pectin lyase-like superfamily protein (.1) Potri.007G144200 [exp] 560 / 0 AT3G59850 482 / 1e-170 Pectin lyase-like superfamily protein (.1) Potri.017G003500 [exp] 558 / 0 AT3G59850 498 / 4e-177 Pectin lyase-like superfamily protein (.1) Potri.017G004500 [exp] 556 / 0 AT3G59850 520 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G006200 [exp] 554 / 0 AT3G59850 503 / 7e-178 Pectin lyase-like superfamily protein (.1) Potri.008G010700 [exp] 550 / 0 AT3G59850 454 / 7e-160 Pectin lyase-like superfamily protein (.1) Potri.010G248200 [exp] 547 / 0 AT2G43870 534 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G005300 [exp] 545 / 0 AT3G59850 504 / 3e-179 Pectin lyase-like superfamily protein (.1) Potri.017G005800 [exp] 544 / 0 AT3G59850 499 / 2e-177 Pectin lyase-like superfamily protein (.1) Potri.017G005900 [exp] 539 / 0 AT3G59850 486 / 3e-172 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10002123 pacid=23166360 polypeptide=Lus10002123 locus=Lus10002123.g ID=Lus10002123.BGIv1.0 annot-version=v1.0 ATGGCAACTTTCCATCTACTCTTCTCACTAATTACAGTCATCTGCTACTTGGCCACCTCATCAGTTGCGGTGCCGGCACAGTACAGCATCACCACCTACG GCGCCAAACCCGACGGCAATACCGACTCCACCAAGGCCTTCCTCGCCGCCTGGAACCAAGCATGCCGTTCATCGTCCCCTTCCACCGTCGTCTACGTTCC AGCTGGAAGGTTCGCTCTAAAAAATCTAGCGTTCCAGGGTCCCTGCAAGACCAAATCAATCATGTTCCTCATTGACGGCACCCTCGTTGCTCCGTCCGAT TACGGAGAAATCGGGACCATCGGGAACTGGATTATGTTCCACGCCGTTGACGGCGTTACCATCTCTGGCGGCACGCTTGACGGCAGGGGCGCTGCGCTCT GGTCCTGTAAGTCTAAGTCCAAGTCCTCTAAGGACTGCCCTGAAGGCGCCACGAATTTGGAATTCTCAAATTCCAAAAACATAAGGATCAACGGATTAAC ATCGGTGAACAGCCAGCTCTTCCACATAGTGATCAACAGCTGCCAGAACGTGAAGGTGCAAGGAGTGAGAGTTTCCGCCGCCGGGAACAGTCCCAACACG GACGGGATCCACGTGCAGTCGTCGACTGGAGTGACGATCACGAATTCAAGGATAGGGACGGGGGACGACTGCATCTCGATCGGACCGGGGACCACCAACC TCTGGATCGAGAACATTTCGTGTGGGCCCGGCCACGGCATCAGCATAGGGAGCCTGGGGAAAGAGTTCCACGAGGCGGGAGTTTCAAACGTGACGGTCAA GGCCGTTACTTTCACGGGGACGGAAAACGGCGTCAGGATAAAGTCCTGGGGTAGGCCCAGCACCGGGTTTGCCAAGGATATACTGTTCCAGCACGCCGTT ATGAATAACGTCCACAACCCGATCGTGATTGACCAGAACTACTGCCCGGACGAGAAGAACTGCCCCGGTCAAGCTTCGGGGGTCAAAGTCAGCGACGTGA CGTACCAGGACATTCGCGGGTCGTCGGAGACGGAAGTGGCAGTTAAGTTCACGTGCAGCGGCTCGAACCCGTGCACGGGGATAAGGCTGGAGGATGTGAA ACTTACTTACAAGAATAAGGCGGCGGACTCGTCGTGTAAGAACGCAGACGGGATGGCTTCCGGCGTTGTTCAGCCCAGCAGCTGTTTGTGA
AA sequence Show only first row Show all	>Lus10002123 pacid=23166360 polypeptide=Lus10002123 locus=Lus10002123.g ID=Lus10002123.BGIv1.0 annot-version=v1.0 MATFHLLFSLITVICYLATSSVAVPAQYSITTYGAKPDGNTDSTKAFLAAWNQACRSSSPSTVVYVPAGRFALKNLAFQGPCKTKSIMFLIDGTLVAPSD YGEIGTIGNWIMFHAVDGVTISGGTLDGRGAALWSCKSKSKSSKDCPEGATNLEFSNSKNIRINGLTSVNSQLFHIVINSCQNVKVQGVRVSAAGNSPNT DGIHVQSSTGVTITNSRIGTGDDCISIGPGTTNLWIENISCGPGHGISIGSLGKEFHEAGVSNVTVKAVTFTGTENGVRIKSWGRPSTGFAKDILFQHAV MNNVHNPIVIDQNYCPDEKNCPGQASGVKVSDVTYQDIRGSSETEVAVKFTCSGSNPCTGIRLEDVKLTYKNKAADSSCKNADGMASGVVQPSSCL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43870			Pectin lyase-like superfamily ...		Lus10002123 [exp]	0	1
AT2G43870			Pectin lyase-like superfamily ...		Lus10011419 [exp]	1.0	0.8998
AT5G05340			Peroxidase superfamily protein...		Lus10006534 [exp]	1.4	0.8841
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10012478 [exp]	3.9	0.8572
AT1G71050		HIPP20	heavy metal associated isopren...		Lus10016708 [exp]	4.0	0.8527
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10016353 [exp]	4.5	0.8366
AT1G65680		ATHEXPBETA1.4, ...	expansin B2 (.1)		Lus10038933 [exp]	7.7	0.7971
AT1G22990		HIPP22	heavy metal associated isopren...		Lus10036004 [exp]	7.7	0.8192
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10011031 [exp]	8.5	0.8344
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029182 [exp]	20.2	0.7613
AT1G66400		CML23	calmodulin like 23 (.1)		Lus10021732 [exp]	22.9	0.7711

Compare expression of checked genes

Lus10002123 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.