Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43870 466 / 2e-164 Pectin lyase-like superfamily protein (.1) AT3G59850 456 / 2e-160 Pectin lyase-like superfamily protein (.1) AT2G43890 396 / 8e-137 Pectin lyase-like superfamily protein (.1) AT2G43860 387 / 6e-133 Pectin lyase-like superfamily protein (.1) AT2G43880 380 / 2e-130 Pectin lyase-like superfamily protein (.1) AT1G05660 377 / 3e-129 Pectin lyase-like superfamily protein (.1) AT1G05650 376 / 6e-129 Pectin lyase-like superfamily protein (.1) AT1G65570 353 / 8e-120 Pectin lyase-like superfamily protein (.1) AT3G57510 267 / 8e-86 ADPG1 Pectin lyase-like superfamily protein (.1) AT1G43080 266 / 8e-86 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011418 [exp] 669 / 0 AT2G43870 499 / 2e-177 Pectin lyase-like superfamily protein (.1) Lus10002126 [exp] 518 / 0 AT2G43870 461 / 1e-162 Pectin lyase-like superfamily protein (.1) Lus10022530 [exp] 498 / 2e-176 AT2G43870 471 / 4e-166 Pectin lyase-like superfamily protein (.1) Lus10002125 [exp] 473 / 5e-167 AT3G59850 509 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011419 [exp] 464 / 2e-163 AT2G43870 507 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10002123 [exp] 459 / 2e-161 AT2G43870 498 / 5e-177 Pectin lyase-like superfamily protein (.1) Lus10008343 [exp] 360 / 4e-122 AT1G05650 425 / 1e-147 Pectin lyase-like superfamily protein (.1) Lus10010584 [exp] 350 / 4e-118 AT1G05660 424 / 2e-147 Pectin lyase-like superfamily protein (.1) Lus10005304 [exp] 346 / 1e-116 AT1G05660 420 / 1e-145 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G144100 [exp] 501 / 2e-178 AT2G43870 525 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G010700 [exp] 499 / 1e-177 AT3G59850 454 / 7e-160 Pectin lyase-like superfamily protein (.1) Potri.007G144200 [exp] 499 / 3e-177 AT3G59850 482 / 1e-170 Pectin lyase-like superfamily protein (.1) Potri.007G144400 [exp] 496 / 4e-176 AT3G59850 476 / 2e-168 Pectin lyase-like superfamily protein (.1) Potri.010G248200 [exp] 494 / 1e-175 AT2G43870 534 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G005800 [exp] 492 / 1e-174 AT3G59850 499 / 2e-177 Pectin lyase-like superfamily protein (.1) Potri.017G006200 [exp] 493 / 2e-174 AT3G59850 503 / 7e-178 Pectin lyase-like superfamily protein (.1) Potri.017G005300 [exp] 479 / 1e-169 AT3G59850 504 / 3e-179 Pectin lyase-like superfamily protein (.1) Potri.017G003500 [exp] 477 / 1e-168 AT3G59850 498 / 4e-177 Pectin lyase-like superfamily protein (.1) Potri.017G004500 [exp] 471 / 3e-166 AT3G59850 520 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10002124 pacid=23166342 polypeptide=Lus10002124 locus=Lus10002124.g ID=Lus10002124.BGIv1.0 annot-version=v1.0 ATGAACAATTCAGTACTTTCACTTCTCTCCCTCCTCCTTCCCATTGCTCTGCTCTCCCAGGCATCAGCTGCTGCTCCGCAACTCAACGTCGTCCAATTCG GAGCGAAACCGGACGGCAGGACCGATTCTACCAAAGCCTTCGTAGCCGCGTGGAAACAAGCCTGCGGTTCGACCAAACCAGTCACGTTGTACGTGCCCAA AGGAAGGTTCCTAACCAAGAGCATGGAGTTGACAGGACCCTGCAAGAACAATGCCATCTTCATCCGAATCGACGGCACCCTCGTCGCCCCTTCCAACATC TGGGCCATCGGTAATAACCCCAATTGGATCGGTTTCCGCTACGTCGATGGCCTCACTATCTCCGGTGGCGTCCTCGACGGCCAGGGGGCCGGTTTGTGGG CTTGCAAAACCGCTGGCCGAAAATGTCCCACCGGCGTTACGAGTCTGGGATTTTCGTTCTGCAAGAATGTGTTGGTGAGCGGGCTGACTTCTCTGAACAG CCAGATGTTCCACATAGTGATAAATTATAGCAACAATTTGAAATTGAAAGGAGTTAAAGTGTCTGCACCTGGAAATTCGCCCAACACAGACGGAATCCAT GTCCAGATGTCGACCGGAGTAAGCATTGTCGGCACCAAAATCGGCACCGGGGACGATTGCGTATCCGTCGGCCCCGGCGCAGCCAATTTGTGGATCGAGA ATGTATCATGTGGGCCAGGCCATGGCATCAGCATTGGGAGTCTGGGAAAGGATGTGAATGAGGCGGGAGTTCAAAACGTGACGGTTAAATCGACTACATT CACTGGAACGACGAACGGGGTGAGAATCAAGGCATGGGGGAAGCAGAGCAACGGATTTGCAAGGAACATTCTTTTCCAACATTCAACGATGAACAATGTC CAGAATCCCATCATAATTGACCAACGTTACTGCCCGGAACATAATTGTGCTGACTCGGCATCGGGGGTTAAGGTAAGCGACGTGACGTACCAAGATATAC ACGGGACGTCAGCGACGCAGGTAGCGCTGAAATTCGATTGCAGCAAGAGGAATCCTTGTAGAGGGATCAGGCTGGACAATGTGAGATTGACGTACAAAAA CCAACCTGCGGTGGCGTCTTGTGCTAATGCTGCTGGAACTAATTATGGACTGGTTCAGCCTAACAATTGCTTGTAG
AA sequence Show only first row Show all	>Lus10002124 pacid=23166342 polypeptide=Lus10002124 locus=Lus10002124.g ID=Lus10002124.BGIv1.0 annot-version=v1.0 MNNSVLSLLSLLLPIALLSQASAAAPQLNVVQFGAKPDGRTDSTKAFVAAWKQACGSTKPVTLYVPKGRFLTKSMELTGPCKNNAIFIRIDGTLVAPSNI WAIGNNPNWIGFRYVDGLTISGGVLDGQGAGLWACKTAGRKCPTGVTSLGFSFCKNVLVSGLTSLNSQMFHIVINYSNNLKLKGVKVSAPGNSPNTDGIH VQMSTGVSIVGTKIGTGDDCVSVGPGAANLWIENVSCGPGHGISIGSLGKDVNEAGVQNVTVKSTTFTGTTNGVRIKAWGKQSNGFARNILFQHSTMNNV QNPIIIDQRYCPEHNCADSASGVKVSDVTYQDIHGTSATQVALKFDCSKRNPCRGIRLDNVRLTYKNQPAVASCANAAGTNYGLVQPNNCL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43870			Pectin lyase-like superfamily ...		Lus10002124 [exp]	0	1
AT4G00080		UNE11	unfertilized embryo sac 11, Pl...		Lus10030292 [exp]	1.0	0.9738
					Lus10025963 [exp]	3.2	0.9654
AT3G01190			Peroxidase superfamily protein...		Lus10018374 [exp]	3.9	0.9505
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10039399 [exp]	4.5	0.9731
AT5G06490			RING/U-box superfamily protein...		Lus10008972 [exp]	4.6	0.9591
AT1G61050			alpha 1,4-glycosyltransferase ...		Lus10011206 [exp]	5.1	0.9517
AT2G45570		CYP76C2	"cytochrome P450, family 76, s...		Lus10027426 [exp]	5.7	0.9716
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Lus10035971 [exp]	6.3	0.9674
AT1G66470	bHLH	AtRHD6, RHD6, b...	ROOT HAIR DEFECTIVE6 (.1)		Lus10017634 [exp]	7.6	0.9387
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10038959 [exp]	11.2	0.9637

Compare expression of checked genes

Lus10002124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.