Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59850 509 / 0 Pectin lyase-like superfamily protein (.1) AT2G43870 500 / 5e-178 Pectin lyase-like superfamily protein (.1) AT2G43890 443 / 3e-155 Pectin lyase-like superfamily protein (.1) AT2G43860 437 / 1e-152 Pectin lyase-like superfamily protein (.1) AT1G05650 434 / 6e-152 Pectin lyase-like superfamily protein (.1) AT1G05660 432 / 5e-151 Pectin lyase-like superfamily protein (.1) AT2G43880 408 / 2e-141 Pectin lyase-like superfamily protein (.1) AT1G65570 392 / 3e-135 Pectin lyase-like superfamily protein (.1) AT3G57510 284 / 2e-92 ADPG1 Pectin lyase-like superfamily protein (.1) AT1G17150 282 / 4e-92 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011419 [exp] 649 / 0 AT2G43870 507 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10002123 [exp] 638 / 0 AT2G43870 498 / 5e-177 Pectin lyase-like superfamily protein (.1) Lus10002124 [exp] 505 / 7e-180 AT2G43870 505 / 7e-180 Pectin lyase-like superfamily protein (.1) Lus10011418 [exp] 496 / 3e-176 AT2G43870 499 / 2e-177 Pectin lyase-like superfamily protein (.1) Lus10022530 [exp] 459 / 3e-161 AT2G43870 471 / 4e-166 Pectin lyase-like superfamily protein (.1) Lus10002126 [exp] 456 / 3e-160 AT2G43870 461 / 1e-162 Pectin lyase-like superfamily protein (.1) Lus10008343 [exp] 399 / 1e-137 AT1G05650 425 / 1e-147 Pectin lyase-like superfamily protein (.1) Lus10010584 [exp] 390 / 5e-134 AT1G05660 424 / 2e-147 Pectin lyase-like superfamily protein (.1) Lus10005304 [exp] 385 / 4e-132 AT1G05660 420 / 1e-145 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G003500 [exp] 572 / 0 AT3G59850 498 / 4e-177 Pectin lyase-like superfamily protein (.1) Potri.010G248200 [exp] 569 / 0 AT2G43870 534 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G144200 [exp] 568 / 0 AT3G59850 482 / 1e-170 Pectin lyase-like superfamily protein (.1) Potri.017G004500 [exp] 566 / 0 AT3G59850 520 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G144100 [exp] 562 / 0 AT2G43870 525 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G144400 [exp] 560 / 0 AT3G59850 476 / 2e-168 Pectin lyase-like superfamily protein (.1) Potri.008G010700 [exp] 556 / 0 AT3G59850 454 / 7e-160 Pectin lyase-like superfamily protein (.1) Potri.017G005300 [exp] 556 / 0 AT3G59850 504 / 3e-179 Pectin lyase-like superfamily protein (.1) Potri.017G006200 [exp] 551 / 0 AT3G59850 503 / 7e-178 Pectin lyase-like superfamily protein (.1) Potri.017G005900 [exp] 550 / 0 AT3G59850 486 / 3e-172 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10002125 pacid=23166362 polypeptide=Lus10002125 locus=Lus10002125.g ID=Lus10002125.BGIv1.0 annot-version=v1.0 ATGGCGGCACCAATTATAACCTTCTTCCTACTAACTATTTACTATTCCACCCTCTCAGCTGCTGCAATCATACAATACAGCGTGACCAGCTACGGAGCCA AGCCGGATGGCAGAACCGACTCCACCGACGCCTTCCTGGCGGCTTGGAACCAAGCCTGTGACTCGGCGTCCCCTTCCACGGTTTACGTGCCAGCTGGACG ATTCTTCCTCAGGAATGTGGCGTTTCAAGGCCCTTGCAAGAGCAAGTCAATCCTGATGCGTATATACGGCACCCTCGTCGCTCCGTCTGATTACTCCGTC ATCGCAAGCGTTGGGAAGTGGATTGCGTTCCATAACGTTGACGGCGTTACCGTCTCTGGCGGCACCCTTGACGGCCAGGGTTCCAGCCTCTGGTCCTGTA AGGCCTCCGGGAAAAGCTGCCCTGCTGGCGCCAGGAATTTGGAATTCTCGGGTTCAAAGAACATACATATCAACGGACTATCCTCGGTGAACAGCCAGCT GTTCCACATAGTAATCGACGGCCGTGAAAACGTGAAAGTACAAGGAGTGAGAGTGTCTGCCGCCGGGAACAGTCCGAACACCGACGGGATCCACGTGCAG TCATCGACGGGAGTGACGATCACAAATTCAAGGATAGGGACAGGGGACGACTGCGTCTCAATCGGACCCGGGACCACCAACCTGTGGATCGAGAACATCT CGTGTGGGCCCGGCCACGGCATCAGCATCGGGAGCCTAGGGAAGCAGTTCAACGAGGCGGGAGTTTCAAACGTGACGGTTAAGACCGTTACTTTCACGGG GACTGAAAACGGCGTGAGGATAAAGTCGTGGGGTAGGCCCAGCACCGGTTTCGCCAGGGGAATTCTGTTCCAGCACGCCGTTATGAATAATGTCCACAAC CCGATTGTTATCGACCAGAACTACTGCCCGAACGAGGAAAACTGCCCCGGTCAGGCTTCTGGGGTTAAAGTGAGCGACGTGACGTACCGGGATATCCATG GGTCGTCGCAGACGGAAGTTGCCGTGAAATTTGCGTGCAGTATGAAGAATCCGTGCACTGGGATTAAGTTGGAGGACGTGAAGCTGAGTTACAAGAATAA GGCGGCGGATTCGTCGTGTCAGAACGCCGATGGGACGGCGTCCGGATTCGTTCAGCCGTCTAGCTGTCTGTAG
AA sequence Show only first row Show all	>Lus10002125 pacid=23166362 polypeptide=Lus10002125 locus=Lus10002125.g ID=Lus10002125.BGIv1.0 annot-version=v1.0 MAAPIITFFLLTIYYSTLSAAAIIQYSVTSYGAKPDGRTDSTDAFLAAWNQACDSASPSTVYVPAGRFFLRNVAFQGPCKSKSILMRIYGTLVAPSDYSV IASVGKWIAFHNVDGVTVSGGTLDGQGSSLWSCKASGKSCPAGARNLEFSGSKNIHINGLSSVNSQLFHIVIDGRENVKVQGVRVSAAGNSPNTDGIHVQ SSTGVTITNSRIGTGDDCVSIGPGTTNLWIENISCGPGHGISIGSLGKQFNEAGVSNVTVKTVTFTGTENGVRIKSWGRPSTGFARGILFQHAVMNNVHN PIVIDQNYCPNEENCPGQASGVKVSDVTYRDIHGSSQTEVAVKFACSMKNPCTGIKLEDVKLSYKNKAADSSCQNADGTASGFVQPSSCL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59850			Pectin lyase-like superfamily ...		Lus10002125 [exp]	0	1
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Lus10003553 [exp]	8.7	0.8532
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10029033 [exp]	14.1	0.8318
AT5G44390			FAD-binding Berberine family p...		Lus10008410 [exp]	14.6	0.8343
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10002667 [exp]	20.6	0.7683
					Lus10024617 [exp]	28.1	0.7473
					Lus10003860 [exp]	34.3	0.8248
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10023293 [exp]	41.1	0.7207
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Lus10040906 [exp]	41.3	0.7888
AT3G21220		ATMAP2K_ALPHA, ...	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10003677 [exp]	44.6	0.7441
AT5G40850		UPM1	urophorphyrin methylase 1 (.1....		Lus10027819 [exp]	45.0	0.8116

Compare expression of checked genes

Lus10002125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.